PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G195000.1

Common Name

B456_009G195000, LOC105769812

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 425aa MW: 46133.3 Da PI: 9.4827

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G195000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00047	179	200	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L+ H+ + H Gorai.009G195000.1 179 CSQCGEVFPKIESLELHQAVrH 200 ******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.933	177	205	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	179	200	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.06E-24	202	421	No hit	No description
Gene3D	G3DSA:3.90.228.10	2.7E-15	204	421	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MALLTFLPEP AAEPMKVEQP SKRGRNPVKK QKEKQPSSWD QIKNLLSCKQ IEGSKVHDPS 60 KNNQLPHHHG YSKLGSSCKS ICSFNDVVHG NTRVVHRADN SPESSTVGQE TGLLRRKAGN 120 SSSTRSLSGS TRTNNSSTTY TTSSSSRAMQ FRKLSGCYEC RMIVDPSRYP SSRTTISACS 180 QCGEVFPKIE SLELHQAVRH AVSELGPDDS GRNIVEIIFK SSWLKKDNPI CKIERILKVH 240 NTQRTIQRFE DCRDAVKTRA LNSTRKNPRC AADGNELLRF HCTTLSCSLG ARGSSSLCGS 300 IPGCGVCTII KQGFQKKGGG AAAAAEFKGV CTTASSGRAH DSLKCTDGRR AMLVCRVIAG 360 RVKRVTEDAP PFEEDNSGVV AAATGSYDSL AAYAGVYSNL EELVVFNPRA ILPCFVVIYK 420 AHES*

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MALLTFLPEP AAEPMKVEQP SKRGRNPVKK QKEKQPSSWD QIKNLLSCKQ IEGSKVHDPS  60
KNNQLPHHHG YSKLGSSCKS ICSFNDVVHG NTRVVHRADN SPESSTVGQE TGLLRRKAGN  120
SSSTRSLSGS TRTNNSSTTY TTSSSSRAMQ FRKLSGCYEC RMIVDPSRYP SSRTTISACS  180
QCGEVFPKIE SLELHQAVRH AVSELGPDDS GRNIVEIIFK SSWLKKDNPI CKIERILKVH  240
NTQRTIQRFE DCRDAVKTRA LNSTRKNPRC AADGNELLRF HCTTLSCSLG ARGSSSLCGS  300
IPGCGVCTII KQGFQKKGGG AAAAAEFKGV CTTASSGRAH DSLKCTDGRR AMLVCRVIAG  360
RVKRVTEDAP PFEEDNSGVV AAATGSYDSL AAYAGVYSNL EELVVFNPRA ILPCFVVIYK  420
AHES*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012446153.1	0.0	PREDICTED: uncharacterized protein LOC105769812
TrEMBL	A0A0D2TMP9	0.0	A0A0D2TMP9_GOSRA; Uncharacterized protein
STRING	Gorai.009G195000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1916	28	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	0.0	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Gorai.009G195000.1
Entrez Gene	105769812

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]