PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G192500.1

Common Name

B456_009G192500

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 216aa MW: 23669.7 Da PI: 10.3836

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G192500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.1	1.2e-15	145	195	3	53
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 ++r +r++kNRe+A rsR+RK+a++ eLe kv+ L++eN +L+ + e++ Gorai.009G192500.1 145 NDRRHKRMMKNRESAARSRARKQAYTTELELKVAHLQEENAKLRRQQEKIL 195 689*****************************************8776654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-12	143	207	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.346	145	194	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.6E-13	146	194	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.69E-11	147	194	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.6E-14	147	194	No hit	No description
CDD	cd14707	1.32E-27	147	197	No hit	No description
PROSITE pattern	PS00036	0	150	165	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MEEVWKDISL ASLSDHPVDS ILSTRTKNPN FPSMILLNFL ATPINKEPPT PRTSVVSSND 60 TSSTEGPAPF VPGTILSLKS GFGSACRCTE TGDPMRPNLE VNARAGVPAA PSFSSYSSGF 120 RGFGSPEAFP SFCTKRAPES NENSNDRRHK RMMKNRESAA RSRARKQAYT TELELKVAHL 180 QEENAKLRRQ QEKILAARDQ VPKKNTLSRT STAPF*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012441842.1	1e-157	PREDICTED: protein FD-like, partial
TrEMBL	A0A0D2TSJ5	1e-156	A0A0D2TSJ5_GOSRA; Uncharacterized protein
STRING	Gorai.009G192500.1	1e-157	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1934	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35900.1	2e-42	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G192500.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]