PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G187500.5

Common Name

B456_009G187500

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 918aa MW: 102011 Da PI: 6.8162

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G187500.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	87.5	1.1e-27	592	643	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yFs ++kdAAk+Lgvc+T+LKr+CR++GI+RWP+Rk++++ Gorai.009G187500.5 592 AEKTITLQVLRQYFSESLKDAAKSLGVCPTTLKRTCRHHGIERWPSRKLQKV 643 589**********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.302	582	663	IPR003035	RWP-RK domain
Pfam	PF02042	2.3E-24	595	643	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.05E-22	818	906	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.4E-21	820	900	No hit	No description
PROSITE profile	PS51745	25.483	820	903	IPR000270	PB1 domain
SMART	SM00666	1.8E-22	820	903	IPR000270	PB1 domain
Pfam	PF00564	6.5E-18	821	902	IPR000270	PB1 domain
CDD	cd06407	1.53E-39	822	902	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 918 aa Download sequence Send to blast
MQLDYMDELL LDGCWLEASP TEGSDFLDPN AFFDPTFEWP TLDSNGGDLG GSLFQGEDPI 60 SFLPGNPHMN ENHSQGAHLS HNLDDVDGVS RNLHGDCMTD ASELSRRWWI GPRANPGPST 120 SVMQRLIGAL NHIKDSAKET DVLVQLWLPV NKGGRRILTT SEQPFSLDPN SQRLASYRNI 180 SAKYQFPAEE DSKDMAGLPG RVFLSKVPEW TPDVRFFRSD EYHRVDHAQQ HGVRGTFALP 240 VFEQGNRTCL GVIEVVMTTE KIKIKPEMES VCKALEAVNL RSFTASSTRN IQACYSSYQA 300 ALPEIKEVLK RACETHRLPL AQTWVPCMQL GKEGCPHSTE NYFHCVSTVD DACYIAKPNI 360 RGFHEVCSEH HLLKGQGVAG RAFMTNQPCF STDITSFKKT EYPLAHHAKM LKLHAAVAIR 420 FRCIHTGKAD FVLEFFLPVD CRDPEGQKEM LNSLSITLQQ VCCSLRVVTN EELEEDRDMG 480 VSEVIASLDG IPCRKELSEE QCTYHSEKYS RENSSWTASL TEVNQSSSTS TAMKLRKEKP 540 RATWDEKISK VKQHKKQISL RGTVEGGDST INEISFSSAT KRKTGQKRHS KAEKTITLQV 600 LRQYFSESLK DAAKSLGVCP TTLKRTCRHH GIERWPSRKL QKVGNSLEKL QHVIDSVQGV 660 SGAFHISSLY PNFSELASPR SSGKSTSSAS VLGLNDKPKK TTILPEGGNF VSQAATSNSP 720 SSSCSQSSSS SHSCSSGTHH PSKSNISGNG GLIIGENSGN GELKRVTNDT ELHTLSQEGL 780 KLFPRSHSPA SVKEQLISDS IQPVVTENNS QIAQDLDAQT QKVKVTYGDD KIHFRMQSKW 840 RLKDLLLEIT RRFNIDDISG FDLKYLDDDS EWVLLTCDAD LEECIDVCRW CEGNTIRLLL 900 QASHHHLDRS SGSTCPS*

Sequence ? help Back to Top

Protein Sequence Length: 918 aa Download sequence Send to blast

MQLDYMDELL LDGCWLEASP TEGSDFLDPN AFFDPTFEWP TLDSNGGDLG GSLFQGEDPI  60
SFLPGNPHMN ENHSQGAHLS HNLDDVDGVS RNLHGDCMTD ASELSRRWWI GPRANPGPST  120
SVMQRLIGAL NHIKDSAKET DVLVQLWLPV NKGGRRILTT SEQPFSLDPN SQRLASYRNI  180
SAKYQFPAEE DSKDMAGLPG RVFLSKVPEW TPDVRFFRSD EYHRVDHAQQ HGVRGTFALP  240
VFEQGNRTCL GVIEVVMTTE KIKIKPEMES VCKALEAVNL RSFTASSTRN IQACYSSYQA  300
ALPEIKEVLK RACETHRLPL AQTWVPCMQL GKEGCPHSTE NYFHCVSTVD DACYIAKPNI  360
RGFHEVCSEH HLLKGQGVAG RAFMTNQPCF STDITSFKKT EYPLAHHAKM LKLHAAVAIR  420
FRCIHTGKAD FVLEFFLPVD CRDPEGQKEM LNSLSITLQQ VCCSLRVVTN EELEEDRDMG  480
VSEVIASLDG IPCRKELSEE QCTYHSEKYS RENSSWTASL TEVNQSSSTS TAMKLRKEKP  540
RATWDEKISK VKQHKKQISL RGTVEGGDST INEISFSSAT KRKTGQKRHS KAEKTITLQV  600
LRQYFSESLK DAAKSLGVCP TTLKRTCRHH GIERWPSRKL QKVGNSLEKL QHVIDSVQGV  660
SGAFHISSLY PNFSELASPR SSGKSTSSAS VLGLNDKPKK TTILPEGGNF VSQAATSNSP  720
SSSCSQSSSS SHSCSSGTHH PSKSNISGNG GLIIGENSGN GELKRVTNDT ELHTLSQEGL  780
KLFPRSHSPA SVKEQLISDS IQPVVTENNS QIAQDLDAQT QKVKVTYGDD KIHFRMQSKW  840
RLKDLLLEIT RRFNIDDISG FDLKYLDDDS EWVLLTCDAD LEECIDVCRW CEGNTIRLLL  900
QASHHHLDRS SGSTCPS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012446364.1	0.0	PREDICTED: protein NLP4-like isoform X3
TrEMBL	A0A0D2QIN9	0.0	A0A0D2QIN9_GOSRA; Uncharacterized protein
STRING	Gorai.009G187500.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G187500.5

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]