PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G187500.4

Common Name

B456_009G187500

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 919aa MW: 102139 Da PI: 6.8162

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G187500.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	87.5	1.1e-27	593	644	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yFs ++kdAAk+Lgvc+T+LKr+CR++GI+RWP+Rk++++ Gorai.009G187500.4 593 AEKTITLQVLRQYFSESLKDAAKSLGVCPTTLKRTCRHHGIERWPSRKLQKV 644 589**********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.302	583	664	IPR003035	RWP-RK domain
Pfam	PF02042	2.3E-24	596	644	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.05E-22	819	907	No hit	No description
PROSITE profile	PS51745	25.483	821	904	IPR000270	PB1 domain
SMART	SM00666	1.8E-22	821	904	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.4E-21	821	901	No hit	No description
Pfam	PF00564	6.5E-18	822	903	IPR000270	PB1 domain
CDD	cd06407	1.45E-39	823	903	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 919 aa Download sequence Send to blast
MQLDYMDELL LDGCWLEASP TEGSDFLDPN AFFDPTFEWP TLDSNGGDLG GSLFQGEDPI 60 SFLPGNPHMN ENHSQGAHLS HNLDDVDGVS RNLHGDCMTD ASELSRRWWI GPRANPGPST 120 SVMQRLIGAL NHIKDSAKET DVLVQLWLPV NKGGRRILTT SEQPFSLDPN SQRLASYRNI 180 SAKYQFPAEE DSKDMAGLPG RVFLSKVPEW TPDVRFFRSD EYHRVDHAQQ HGVRGTFALP 240 VFEQGNRTCL GVIEVVMTTE KIKIKPEMES VCKALEQAVN LRSFTASSTR NIQACYSSYQ 300 AALPEIKEVL KRACETHRLP LAQTWVPCMQ LGKEGCPHST ENYFHCVSTV DDACYIAKPN 360 IRGFHEVCSE HHLLKGQGVA GRAFMTNQPC FSTDITSFKK TEYPLAHHAK MLKLHAAVAI 420 RFRCIHTGKA DFVLEFFLPV DCRDPEGQKE MLNSLSITLQ QVCCSLRVVT NEELEEDRDM 480 GVSEVIASLD GIPCRKELSE EQCTYHSEKY SRENSSWTAS LTEVNQSSST STAMKLRKEK 540 PRATWDEKIS KVKQHKKQIS LRGTVEGGDS TINEISFSSA TKRKTGQKRH SKAEKTITLQ 600 VLRQYFSESL KDAAKSLGVC PTTLKRTCRH HGIERWPSRK LQKVGNSLEK LQHVIDSVQG 660 VSGAFHISSL YPNFSELASP RSSGKSTSSA SVLGLNDKPK KTTILPEGGN FVSQAATSNS 720 PSSSCSQSSS SSHSCSSGTH HPSKSNISGN GGLIIGENSG NGELKRVTND TELHTLSQEG 780 LKLFPRSHSP ASVKEQLISD SIQPVVTENN SQIAQDLDAQ TQKVKVTYGD DKIHFRMQSK 840 WRLKDLLLEI TRRFNIDDIS GFDLKYLDDD SEWVLLTCDA DLEECIDVCR WCEGNTIRLL 900 LQASHHHLDR SSGSTCPS*

Sequence ? help Back to Top

Protein Sequence Length: 919 aa Download sequence Send to blast

MQLDYMDELL LDGCWLEASP TEGSDFLDPN AFFDPTFEWP TLDSNGGDLG GSLFQGEDPI  60
SFLPGNPHMN ENHSQGAHLS HNLDDVDGVS RNLHGDCMTD ASELSRRWWI GPRANPGPST  120
SVMQRLIGAL NHIKDSAKET DVLVQLWLPV NKGGRRILTT SEQPFSLDPN SQRLASYRNI  180
SAKYQFPAEE DSKDMAGLPG RVFLSKVPEW TPDVRFFRSD EYHRVDHAQQ HGVRGTFALP  240
VFEQGNRTCL GVIEVVMTTE KIKIKPEMES VCKALEQAVN LRSFTASSTR NIQACYSSYQ  300
AALPEIKEVL KRACETHRLP LAQTWVPCMQ LGKEGCPHST ENYFHCVSTV DDACYIAKPN  360
IRGFHEVCSE HHLLKGQGVA GRAFMTNQPC FSTDITSFKK TEYPLAHHAK MLKLHAAVAI  420
RFRCIHTGKA DFVLEFFLPV DCRDPEGQKE MLNSLSITLQ QVCCSLRVVT NEELEEDRDM  480
GVSEVIASLD GIPCRKELSE EQCTYHSEKY SRENSSWTAS LTEVNQSSST STAMKLRKEK  540
PRATWDEKIS KVKQHKKQIS LRGTVEGGDS TINEISFSSA TKRKTGQKRH SKAEKTITLQ  600
VLRQYFSESL KDAAKSLGVC PTTLKRTCRH HGIERWPSRK LQKVGNSLEK LQHVIDSVQG  660
VSGAFHISSL YPNFSELASP RSSGKSTSSA SVLGLNDKPK KTTILPEGGN FVSQAATSNS  720
PSSSCSQSSS SSHSCSSGTH HPSKSNISGN GGLIIGENSG NGELKRVTND TELHTLSQEG  780
LKLFPRSHSP ASVKEQLISD SIQPVVTENN SQIAQDLDAQ TQKVKVTYGD DKIHFRMQSK  840
WRLKDLLLEI TRRFNIDDIS GFDLKYLDDD SEWVLLTCDA DLEECIDVCR WCEGNTIRLL  900
LQASHHHLDR SSGSTCPS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012446364.1	0.0	PREDICTED: protein NLP4-like isoform X3
TrEMBL	A0A0D2TMD1	0.0	A0A0D2TMD1_GOSRA; Uncharacterized protein
STRING	Gorai.009G187500.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G187500.4

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]