PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G187500.2

Common Name

B456_009G187500, LOC105769932

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 927aa MW: 102967 Da PI: 6.7165

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G187500.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	87.5	1.1e-27	601	652	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yFs ++kdAAk+Lgvc+T+LKr+CR++GI+RWP+Rk++++ Gorai.009G187500.2 601 AEKTITLQVLRQYFSESLKDAAKSLGVCPTTLKRTCRHHGIERWPSRKLQKV 652 589**********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.302	591	672	IPR003035	RWP-RK domain
Pfam	PF02042	2.3E-24	604	652	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.05E-22	827	915	No hit	No description
PROSITE profile	PS51745	25.483	829	912	IPR000270	PB1 domain
SMART	SM00666	1.8E-22	829	912	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.5E-21	829	909	No hit	No description
Pfam	PF00564	6.6E-18	830	911	IPR000270	PB1 domain
CDD	cd06407	1.61E-39	831	911	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 927 aa Download sequence Send to blast
MEDSILLPGM QLDYMDELLL DGCWLEASPT EGSDFLDPNA FFDPTFEWPT LDSNGGDLGG 60 SLFQGEDPIS FLPGNPHMNE NHSQGAHLSH NLDDVDGVSR NLHGDCMTDA SELSRRWWIG 120 PRANPGPSTS VMQRLIGALN HIKDSAKETD VLVQLWLPVN KGGRRILTTS EQPFSLDPNS 180 QRLASYRNIS AKYQFPAEED SKDMAGLPGR VFLSKVPEWT PDVRFFRSDE YHRVDHAQQH 240 GVRGTFALPV FEQGNRTCLG VIEVVMTTEK IKIKPEMESV CKALEAVNLR SFTASSTRNI 300 QACYSSYQAA LPEIKEVLKR ACETHRLPLA QTWVPCMQLG KEGCPHSTEN YFHCVSTVDD 360 ACYIAKPNIR GFHEVCSEHH LLKGQGVAGR AFMTNQPCFS TDITSFKKTE YPLAHHAKML 420 KLHAAVAIRF RCIHTGKADF VLEFFLPVDC RDPEGQKEML NSLSITLQQV CCSLRVVTNE 480 ELEEDRDMGV SEVIASLDGI PCRKELSEEQ CTYHSEKYSR ENSSWTASLT EVNQSSSTST 540 AMKLRKEKPR ATWDEKISKV KQHKKQISLR GTVEGGDSTI NEISFSSATK RKTGQKRHSK 600 AEKTITLQVL RQYFSESLKD AAKSLGVCPT TLKRTCRHHG IERWPSRKLQ KVGNSLEKLQ 660 HVIDSVQGVS GAFHISSLYP NFSELASPRS SGKSTSSASV LGLNDKPKKT TILPEGGNFV 720 SQAATSNSPS SSCSQSSSSS HSCSSGTHHP SKSNISGNGG LIIGENSGNG ELKRVTNDTE 780 LHTLSQEGLK LFPRSHSPAS VKEQLISDSI QPVVTENNSQ IAQDLDAQTQ KVKVTYGDDK 840 IHFRMQSKWR LKDLLLEITR RFNIDDISGF DLKYLDDDSE WVLLTCDADL EECIDVCRWC 900 EGNTIRLLLQ ASHHHLDRSS GSTCPS*

Sequence ? help Back to Top

Protein Sequence Length: 927 aa Download sequence Send to blast

MEDSILLPGM QLDYMDELLL DGCWLEASPT EGSDFLDPNA FFDPTFEWPT LDSNGGDLGG  60
SLFQGEDPIS FLPGNPHMNE NHSQGAHLSH NLDDVDGVSR NLHGDCMTDA SELSRRWWIG  120
PRANPGPSTS VMQRLIGALN HIKDSAKETD VLVQLWLPVN KGGRRILTTS EQPFSLDPNS  180
QRLASYRNIS AKYQFPAEED SKDMAGLPGR VFLSKVPEWT PDVRFFRSDE YHRVDHAQQH  240
GVRGTFALPV FEQGNRTCLG VIEVVMTTEK IKIKPEMESV CKALEAVNLR SFTASSTRNI  300
QACYSSYQAA LPEIKEVLKR ACETHRLPLA QTWVPCMQLG KEGCPHSTEN YFHCVSTVDD  360
ACYIAKPNIR GFHEVCSEHH LLKGQGVAGR AFMTNQPCFS TDITSFKKTE YPLAHHAKML  420
KLHAAVAIRF RCIHTGKADF VLEFFLPVDC RDPEGQKEML NSLSITLQQV CCSLRVVTNE  480
ELEEDRDMGV SEVIASLDGI PCRKELSEEQ CTYHSEKYSR ENSSWTASLT EVNQSSSTST  540
AMKLRKEKPR ATWDEKISKV KQHKKQISLR GTVEGGDSTI NEISFSSATK RKTGQKRHSK  600
AEKTITLQVL RQYFSESLKD AAKSLGVCPT TLKRTCRHHG IERWPSRKLQ KVGNSLEKLQ  660
HVIDSVQGVS GAFHISSLYP NFSELASPRS SGKSTSSASV LGLNDKPKKT TILPEGGNFV  720
SQAATSNSPS SSCSQSSSSS HSCSSGTHHP SKSNISGNGG LIIGENSGNG ELKRVTNDTE  780
LHTLSQEGLK LFPRSHSPAS VKEQLISDSI QPVVTENNSQ IAQDLDAQTQ KVKVTYGDDK  840
IHFRMQSKWR LKDLLLEITR RFNIDDISGF DLKYLDDDSE WVLLTCDADL EECIDVCRWC  900
EGNTIRLLLQ ASHHHLDRSS GSTCPS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012446364.1	0.0	PREDICTED: protein NLP4-like isoform X3
TrEMBL	A0A0D2TSA0	0.0	A0A0D2TSA0_GOSRA; Uncharacterized protein
STRING	Gorai.009G187500.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G187500.2
Entrez Gene	105769932

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]