PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G184800.2

Common Name

B456_009G184800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YB

Protein Properties

Length: 194aa MW: 21613.1 Da PI: 6.4427

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G184800.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	174.9	8.4e-55	24	120	1	97
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 vreqdrf+Pianv+rim+k+lP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa+++lGf+dy+epl+vyl++yr Gorai.009G184800.2 24 VREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANEHCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRYR 114 69*************************************************************************************** PP NF-YB 92 elegek 97 elege+ Gorai.009G184800.2 115 ELEGER 120 **97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.7E-51	19	125	IPR009072	Histone-fold
SuperFamily	SSF47113	1.09E-38	27	123	IPR009072	Histone-fold
Pfam	PF00808	2.7E-26	30	94	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.0E-16	58	76	No hit	No description
PRINTS	PR00615	4.0E-16	77	95	No hit	No description
PRINTS	PR00615	4.0E-16	96	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0033613	Molecular Function	activating transcription factor binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MNMRMGEANH TNSHSNSDDN ECTVREQDRF MPIANVIRIM RKILPPHAKI SDDAKETIQE 60 CVSEYISFIT GEANEHCQRE QRKTITAEDV LWAMSKLGFD DYIEPLTVYL HRYRELEGER 120 GSIRGEPVVK RVVDYGTLGV AAFAPAFHMG HHHHHGHGFF GSGAMGGYLK DESSAGSSQA 180 AVANGEPYAQ QHK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	3e-62	23	115	5	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed primarily during seed development. {ECO:0000269\|PubMed:12509518}.
Uniprot	TISSUE SPECIFICITY: Expressed in roots, flowers and developing siliques. Present in etiolated seedlings. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:12509518, ECO:0000269\|PubMed:17322342}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269\|PubMed:12509518, ECO:0000269\|PubMed:17322342}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447021.1	1e-145	PREDICTED: nuclear transcription factor Y subunit B-6
Refseq	XP_016687892.1	1e-145	PREDICTED: nuclear transcription factor Y subunit B-6
Swissprot	Q84W66	4e-76	NFYB6_ARATH; Nuclear transcription factor Y subunit B-6
TrEMBL	A0A0B0MVT1	1e-143	A0A0B0MVT1_GOSAR; Nuclear transcription factor Y subunit B-6-like protein
TrEMBL	A0A0D2TS20	1e-144	A0A0D2TS20_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2UPM6	1e-143	A0A0D2UPM6_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8JC47	1e-143	A0A1U8JC47_GOSHI; nuclear transcription factor Y subunit B-6
TrEMBL	A0A2P5QJQ1	1e-143	A0A2P5QJQ1_GOSBA; Uncharacterized protein
TrEMBL	A0A2P5WW47	1e-143	A0A2P5WW47_GOSBA; Uncharacterized protein
STRING	Gorai.009G184800.1	1e-144	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	9e-70	nuclear factor Y, subunit B6

Link Out ? help Back to Top
Phytozome	Gorai.009G184800.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Jia H,McCarty DR,Suzuki M Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression. Plant Physiol., 2013. 163(3): p. 1293-305 [PMID:24043445] Kim HU, et al. Ectopic overexpression of castor bean LEAFY COTYLEDON2 (LEC2) in Arabidopsis triggers the expression of genes that encode regulators of seed maturation and oil body proteins in vegetative tissues. FEBS Open Bio, 2013. 4: p. 25-32 [PMID:24363987] Gnesutta N,Saad D,Chaves-Sanjuan A,Mantovani R,Nardini M Crystal Structure of the Arabidopsis thaliana L1L/NF-YC3 Histone-fold Dimer Reveals Specificities of the LEC1 Family of NF-Y Subunits in Plants. Mol Plant, 2017. 10(4): p. 645-648 [PMID:27871811] Li D, et al. MYB89 Transcription Factor Represses Seed Oil Accumulation. Plant Physiol., 2017. 173(2): p. 1211-1225 [PMID:27932421] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Han JD, et al. Evolutionary Analysis of the LAFL Genes Involved in the Land Plant Seed Maturation Program. Front Plant Sci, 2017. 8: p. 439 [PMID:28421087]