PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G184800.1 | ||||||||
Common Name | B456_009G184800, LOC105770389 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NF-YB | ||||||||
Protein Properties | Length: 217aa MW: 24188 Da PI: 6.6279 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 174.5 | 1.1e-54 | 47 | 143 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 vreqdrf+Pianv+rim+k+lP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa+++lGf+dy+epl+vyl++yr Gorai.009G184800.1 47 VREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANEHCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRYR 137 69***************************************************************************************** PP NF-YB 92 elegek 97 elege+ Gorai.009G184800.1 138 ELEGER 143 ****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.8E-51 | 42 | 148 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.44E-38 | 50 | 146 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.3E-26 | 53 | 117 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 5.1E-16 | 81 | 99 | No hit | No description |
PRINTS | PR00615 | 5.1E-16 | 100 | 118 | No hit | No description |
PRINTS | PR00615 | 5.1E-16 | 119 | 137 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MERGGFHGYR KLPDNTSGLK VTEMNMRMGE ANHTNSHSNS DDNECTVREQ DRFMPIANVI 60 RIMRKILPPH AKISDDAKET IQECVSEYIS FITGEANEHC QREQRKTITA EDVLWAMSKL 120 GFDDYIEPLT VYLHRYRELE GERGSIRGEP VVKRVVDYGT LGVAAFAPAF HMGHHHHHGH 180 GFFGSGAMGG YLKDESSAGS SQAAVANGEP YAQQHK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 6e-62 | 46 | 138 | 5 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed primarily during seed development. {ECO:0000269|PubMed:12509518}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, flowers and developing siliques. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012447021.1 | 1e-163 | PREDICTED: nuclear transcription factor Y subunit B-6 | ||||
Swissprot | Q84W66 | 1e-83 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | A0A0D2UPM6 | 1e-162 | A0A0D2UPM6_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A2P5QJQ1 | 1e-162 | A0A2P5QJQ1_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G184800.1 | 1e-163 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9896 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.1 | 5e-77 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G184800.1 |
Entrez Gene | 105770389 |