PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G173100.2
Common NameB456_009G173100
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 644aa    MW: 71174.5 Da    PI: 7.9495
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G173100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.61.1e-18340439198
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+k l+ sd+++ grlvlpkk+ae+h   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  ++++gD+v+F++ + 
  Gorai.009G173100.2 340 FEKMLSASDAGRIGRLVLPKKCAEAHfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQVQAGDVVTFSRLE- 428
                         89**************************555566778***************9989999999***9.********************665. PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                          +++lv+++++
  Gorai.009G173100.2 429 PGGKLVMGFRK 439
                         77777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.37E-20337439IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-30337445IPR015300DNA-binding pseudobarrel domain
CDDcd100174.60E-22338439No hitNo description
PfamPF023621.1E-15340439IPR003340B3 DNA binding domain
SMARTSM010191.7E-19340441IPR003340B3 DNA binding domain
PROSITE profilePS5086310.828340441IPR003340B3 DNA binding domain
PROSITE profilePS5105014.401567617IPR011124Zinc finger, CW-type
PfamPF074967.7E-13572614IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MTSTPGAASS SKICFNSDCK DLKSEIPRKG WRLRTGEFAE LCDRCAFAFE EGRFCDTFHL  60
NASGWRTCES CGKRVHCGCI VSVHAFTLLD AGGIECVACA RKNVVMGSSS SWSPSLIFHS  120
SLSERFKEYS AKGWTQLAGS GPVPWRQAPS LFNSPVTQPE LPSRVPYEVD LSTGIDRLNV  180
CDRLSTPSLE KKKVEDFSER LMNGTLKPGT RDIHEKGNAG INCEEQRSPC LTKFQSSLKE  240
EPNPQFGLAV PYTSPDEANG QNGVSGTHLR PNPQPPLAKQ FHSNLQNGTD SSGETQIRNG  300
RPRPDGRGKN NLFPRYWPRF TDQDLQQITG DSNSVITPLF EKMLSASDAG RIGRLVLPKK  360
CAEAHFPPIS QPEGLPLKVQ DSKGKEWIFQ FRFWPNNNSR MYVLEGVTPC IQNMQVQAGD  420
VVTFSRLEPG GKLVMGFRKA STASASDQDN EAKNSNGLSM HGDAEMADPT SWSKVDKSGY  480
IAKEALGAKV AVSRKRKNSM LGSKSKRLRI DNEDLIELKL TWEEAQGLLR PPPNHVASVV  540
VIEGFEFEEY GDAPILGKPT IFATDNMGEK IQWAQCEDCF KWRRLPSNVL LPSKWTCSSN  600
SWDPERSSCS AIQELTAEQL ENLLPQCNPG ICCLKKTKYV GFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C1e-643184431126B3 domain-containing transcription repressor VAL1
5yzz_C1e-643184431126B3 domain-containing transcription repressor VAL1
5z00_C1e-643184431126B3 domain-containing transcription repressor VAL1
5z00_G1e-643184431126B3 domain-containing transcription repressor VAL1
5z00_K1e-643184431126B3 domain-containing transcription repressor VAL1
5z00_M1e-643184431126B3 domain-containing transcription repressor VAL1
6j9a_A1e-643184432127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444504.10.0PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A0D2UNW40.0A0A0D2UNW4_GOSRA; Uncharacterized protein
STRINGGorai.009G173100.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.11e-134VP1/ABI3-like 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]