PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G173100.1 | ||||||||
Common Name | B456_009G173100, LOC105768837 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 886aa MW: 97173.3 Da PI: 7.5917 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58 | 1.7e-18 | 340 | 439 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k l+ sd+++ grlvlpkk+ae+h ++++e+ l+++d++g++W +++++ +++s++yvl+ G + ++++gD+v+F++ + Gorai.009G173100.1 340 FEKMLSASDAGRIGRLVLPKKCAEAHfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQVQAGDVVTFSRLE- 428 89**************************555566778***************9989999999***9.********************665. PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 +++lv+++++ Gorai.009G173100.1 429 PGGKLVMGFRK 439 77777777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.31E-19 | 337 | 439 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-29 | 337 | 445 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.18E-22 | 338 | 439 | No hit | No description |
SMART | SM01019 | 1.7E-19 | 340 | 441 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.828 | 340 | 441 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-15 | 340 | 439 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.401 | 567 | 617 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.1E-12 | 572 | 614 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 886 aa Download sequence Send to blast |
MTSTPGAASS SKICFNSDCK DLKSEIPRKG WRLRTGEFAE LCDRCAFAFE EGRFCDTFHL 60 NASGWRTCES CGKRVHCGCI VSVHAFTLLD AGGIECVACA RKNVVMGSSS SWSPSLIFHS 120 SLSERFKEYS AKGWTQLAGS GPVPWRQAPS LFNSPVTQPE LPSRVPYEVD LSTGIDRLNV 180 CDRLSTPSLE KKKVEDFSER LMNGTLKPGT RDIHEKGNAG INCEEQRSPC LTKFQSSLKE 240 EPNPQFGLAV PYTSPDEANG QNGVSGTHLR PNPQPPLAKQ FHSNLQNGTD SSGETQIRNG 300 RPRPDGRGKN NLFPRYWPRF TDQDLQQITG DSNSVITPLF EKMLSASDAG RIGRLVLPKK 360 CAEAHFPPIS QPEGLPLKVQ DSKGKEWIFQ FRFWPNNNSR MYVLEGVTPC IQNMQVQAGD 420 VVTFSRLEPG GKLVMGFRKA STASASDQDN EAKNSNGLSM HGDAEMADPT SWSKVDKSGY 480 IAKEALGAKV AVSRKRKNSM LGSKSKRLRI DNEDLIELKL TWEEAQGLLR PPPNHVASVV 540 VIEGFEFEEY GDAPILGKPT IFATDNMGEK IQWAQCEDCF KWRRLPSNVL LPSKWTCSSN 600 SWDPERSSCS AIQELTAEQL ENLLPQCNPA ASKKMKAAKQ EMENVDALEG LDTLANLAIL 660 GEGESLPTSS QATTKHPRHR PGCSCIVCIQ PPSGKGPKHK QTCTCNVCET VKRRFRTLMM 720 RREKKQSQKE AETTSKKQQT SLPDKVPDDD PPPCTNAENS SPKPIKIASE GSEDDPNRVK 780 SSISPFKGQI DLNIQPEREE ELSPGSDSGS MMRLLQDATD KHLRQQSTLT SGGNSNSEVS 840 QTQPGGGPEG EKISNSVNLG ASHQDIDRDH PVFSIKTSAP TSATG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5yzy_C | 1e-63 | 318 | 443 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5yzz_C | 1e-63 | 318 | 443 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_C | 1e-63 | 318 | 443 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_G | 1e-63 | 318 | 443 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_K | 1e-63 | 318 | 443 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_M | 1e-63 | 318 | 443 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
6j9a_A | 9e-64 | 318 | 443 | 2 | 127 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012444504.1 | 0.0 | PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X1 | ||||
Swissprot | Q0D5G4 | 0.0 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A0D2TLG0 | 0.0 | A0A0D2TLG0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G173100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6857 | 25 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-165 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G173100.1 |
Entrez Gene | 105768837 |
Publications ? help Back to Top | |||
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