PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G170200.1 | ||||||||
Common Name | B456_009G170200, LOC105770685 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 316aa MW: 34592.5 Da PI: 9.0062 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 115.6 | 2e-36 | 40 | 97 | 2 | 59 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + + lkcprCdstntkfCyynny+ sqPr+fCkaC+r+WtkGG+lrnvPvGggr++++ Gorai.009G170200.1 40 QPEPLKCPRCDSTNTKFCYYNNYNKSQPRHFCKACKRHWTKGGTLRNVPVGGGRKNKR 97 56889***********************************************976665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-24 | 40 | 97 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.8E-32 | 43 | 96 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.559 | 44 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 46 | 82 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MGLSSKEVSS DGLGWSQSLL QAQTLELPKA IKRQHPQNQQ PEPLKCPRCD STNTKFCYYN 60 NYNKSQPRHF CKACKRHWTK GGTLRNVPVG GGRKNKRLKT SNSSNTTAVV ASAVIGNTST 120 TSVALKSSTT SGVNNRLNNF MAIQRSQQQR QDLQLPLADQ KKNTSSIQFQ VMGRPPSSSL 180 LQNPITCGDL DGKSFNINNN GVFLGSTSTT LSLPQTQGLQ FPFSSPSSSS FETTPTSLST 240 SFQSSSIYNY TSETMEDPTI TSIIMPTPSG TASHTWDVSI RSSDMDIANY WNWDDIDALV 300 SIDPNMPWDD SEIKP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012447454.1 | 0.0 | PREDICTED: dof zinc finger protein PBF-like | ||||
TrEMBL | A0A0D2TRD4 | 0.0 | A0A0D2TRD4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G170200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1269 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66940.1 | 8e-32 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G170200.1 |
Entrez Gene | 105770685 |
Publications ? help Back to Top | |||
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