PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G168500.1
Common NameB456_009G168500, LOC105769366
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 433aa    MW: 48837.9 Da    PI: 5.4666
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G168500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.23.1e-18203300398
                         EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                         k+l++sdv+++gr+vlpk+ ae +   +  +e+++++l+d  s +sW++k+++  ++ks++yvl+ ++ +Fvk+ngL  gDf++++  +++
  Gorai.009G168500.1 203 KELKNSDVGSLGRIVLPKREAELNlpTLCDKEGIQVVLKDvYSHQSWTLKYKFwsNNKSRMYVLE-NTVDFVKQNGLGIGDFLILY--EDE 290
                         899******************99999444457899*****7777*******99888888889999.9*******************..669 PP

                         EE..EEEEE- CS
                  B3  89 efelvvkvfr 98 
                         +++l+++v++
  Gorai.009G168500.1 291 GKNLYFSVIK 300
                         9999999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.9E-24198303IPR015300DNA-binding pseudobarrel domain
CDDcd100172.99E-22200300No hitNo description
SuperFamilySSF1019364.45E-20201299IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.264201302IPR003340B3 DNA binding domain
SMARTSM010191.0E-19201302IPR003340B3 DNA binding domain
PfamPF023627.3E-15203300IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0010344Biological Processseed oilbody biogenesis
GO:0010431Biological Processseed maturation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MENSYMPFLP TTSTATNTIL RQPNMGCSQN SEFSIYEPMN SKIFSSKPIT TAPNSQFHHP  60
TQFMAPYQSL QLPYRHPIEQ TDHSLAYPFF LGQNGIEFGS IIASNGAQHG SCFMQTDGIS  120
MAEERRMLDP YGSKAARIKR KLARQRSLSL QRNASSGATA QVDKRRLNSS GADNDVNINN  180
DTKRDLYMFC TPDNKRLRVL LRKELKNSDV GSLGRIVLPK REAELNLPTL CDKEGIQVVL  240
KDVYSHQSWT LKYKFWSNNK SRMYVLENTV DFVKQNGLGI GDFLILYEDE GKNLYFSVIK  300
VERVAAAEPS NNQPYDSQNI YTGMPFTGPL RDEEETCLEL LIEQLKHTEH EESNDLMTLA  360
MDATYSHGPP AADESQHFVS DANVEITATE LQTSSTLLRG KARSVDEIQI NFDDCYSGLD  420
MLPDVNLYNF LL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A5e-531912983110B3 domain-containing transcription factor LEC2
6j9c_D5e-531912983110B3 domain-containing transcription factor LEC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00032PBMTransfer from AT1G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445413.10.0PREDICTED: B3 domain-containing transcription factor LEC2
TrEMBLA0A0D2TRB40.0A0A0D2TRB4_GOSRA; Uncharacterized protein
STRINGGorai.009G168500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92622336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.15e-59B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]