PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G168500.1 | ||||||||
Common Name | B456_009G168500, LOC105769366 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 433aa MW: 48837.9 Da PI: 5.4666 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.2 | 3.1e-18 | 203 | 300 | 3 | 98 |
EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 k+l++sdv+++gr+vlpk+ ae + + +e+++++l+d s +sW++k+++ ++ks++yvl+ ++ +Fvk+ngL gDf++++ +++ Gorai.009G168500.1 203 KELKNSDVGSLGRIVLPKREAELNlpTLCDKEGIQVVLKDvYSHQSWTLKYKFwsNNKSRMYVLE-NTVDFVKQNGLGIGDFLILY--EDE 290 899******************99999444457899*****7777*******99888888889999.9*******************..669 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 +++l+++v++ Gorai.009G168500.1 291 GKNLYFSVIK 300 9999999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.9E-24 | 198 | 303 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.99E-22 | 200 | 300 | No hit | No description |
SuperFamily | SSF101936 | 4.45E-20 | 201 | 299 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.264 | 201 | 302 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-19 | 201 | 302 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.3E-15 | 203 | 300 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0010344 | Biological Process | seed oilbody biogenesis | ||||
GO:0010431 | Biological Process | seed maturation | ||||
GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MENSYMPFLP TTSTATNTIL RQPNMGCSQN SEFSIYEPMN SKIFSSKPIT TAPNSQFHHP 60 TQFMAPYQSL QLPYRHPIEQ TDHSLAYPFF LGQNGIEFGS IIASNGAQHG SCFMQTDGIS 120 MAEERRMLDP YGSKAARIKR KLARQRSLSL QRNASSGATA QVDKRRLNSS GADNDVNINN 180 DTKRDLYMFC TPDNKRLRVL LRKELKNSDV GSLGRIVLPK REAELNLPTL CDKEGIQVVL 240 KDVYSHQSWT LKYKFWSNNK SRMYVLENTV DFVKQNGLGI GDFLILYEDE GKNLYFSVIK 300 VERVAAAEPS NNQPYDSQNI YTGMPFTGPL RDEEETCLEL LIEQLKHTEH EESNDLMTLA 360 MDATYSHGPP AADESQHFVS DANVEITATE LQTSSTLLRG KARSVDEIQI NFDDCYSGLD 420 MLPDVNLYNF LL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9c_A | 5e-53 | 191 | 298 | 3 | 110 | B3 domain-containing transcription factor LEC2 |
6j9c_D | 5e-53 | 191 | 298 | 3 | 110 | B3 domain-containing transcription factor LEC2 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00032 | PBM | Transfer from AT1G28300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012445413.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor LEC2 | ||||
TrEMBL | A0A0D2TRB4 | 0.0 | A0A0D2TRB4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G168500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9262 | 23 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28300.1 | 5e-59 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G168500.1 |
Entrez Gene | 105769366 |
Publications ? help Back to Top | |||
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