PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G168400.1 | ||||||||
Common Name | B456_009G168400, LOC105770893 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 320aa MW: 34645.1 Da PI: 9.6757 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.2 | 7.7e-38 | 35 | 93 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + +kcprC+s ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k++ Gorai.009G168400.1 35 HPPQKCPRCESLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRT 93 56789**************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-25 | 29 | 92 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.3E-32 | 38 | 92 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.705 | 38 | 92 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 40 | 76 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MQQDRGGRGS EQGMKQSQQQ DQRLKPLTGE NQQQHPPQKC PRCESLNTKF CYYNNYSLSQ 60 PRYFCKTCRR YWTQGGTLRN VPVGGGCRKG KRTKVSSSGE NSRSQPLIPQ QQAAQQHSLT 120 SPQSMISSNP MISVSAAFRT KESGSLASSS AIPSVGSYYP AGFMSSLAAV QSMNQPQPFN 180 QPLNQALSMG GDLGGSSNLG LLQGYGVPSF GSQQHQPSQQ TQFFPMVDRD QKTVNMYPSD 240 HERLIQSSRL AAGNSSQQNW HQSFINNSDP TASEAALWSM NNNSSSSTSS AGNTNTSNTT 300 AASLNPNQWP DLPGYGAPP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012447707.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.2-like | ||||
Refseq | XP_012447708.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.2-like | ||||
Refseq | XP_012447709.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.2-like | ||||
Refseq | XP_012447710.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.2-like | ||||
TrEMBL | A0A0D2UNM9 | 0.0 | A0A0D2UNM9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G168400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15986 | 9 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 3e-33 | OBF binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G168400.1 |
Entrez Gene | 105770893 |
Publications ? help Back to Top | |||
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