PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G167600.3
Common NameB456_009G167600, LOC105768872
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 775aa    MW: 85509.6 Da    PI: 6.5909
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G167600.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.8e-07258277525
                         --SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                         +C+ffar G+C  G++CkF+H
  Gorai.009G167600.3 258 ICDFFAR-GWCVKGSSCKFIH 277
                         6******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0089253279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.929253280IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6253277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-4258277IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-5258277IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MPLSTPAAVP RADKDDERRT ASTTRPEFNS SDMEIDDDDE EERGEELQVS SKRNDGSNIM  60
ESKGHVGHSG SDPLSAPGRS EMRIPSKTLY VGESSASFNL CSLPDEPWAT QREDLCKNYD  120
GSKYPISGKR PANEKAIQEY GVNGQDARVI FERKAHEDHH EQHTSSTVNE IMYEATNLIS  180
VDGKEIAIND VISILGRYHS GVGVSSHLGF EQKSKQMGMQ TEDNKRSMKS RSSAPQTSTG  240
SLYPGAEFNS ENKRPALICD FFARGWCVKG SSCKFIHIKD SGSNPSQQSE EDAAEADEKI  300
AVQLDEGIQN TAEKSRPPSP GSSDRLPSSA RNRTTLSPLI QSKDKSIGTS LGSQQFQAST  360
DDSEPSKDVR QTSIGKSLPA DNYVKPGLLS DRGSSTFGNG FLPKHIPYLS GSDTYLGNTY  420
KENQKYRVST WLASLPFSSS SSACSVDAQK MLKNDREHHT SRPSSLLRGF SSLSSFEPEN  480
FPATDIAKDP LHFAEYRIKI SSEDWEPSVP FRPSFFITFG PSSPRREYDP LRDSIDLSNV  540
GERSLKFSFS SQGPSLLDVA YPPTYDDSTS AGPLVPACNA DKITASCHGR YVENLVNNNC  600
YTSGKDSTTD ANDWTSAADM QNGTLVKEEI SSVASHVKDI SKTSKADTDR DARHRRDGFR  660
CKKDLKVDRV REKNEIDIEH KADGEALKES KAMRHFHAAL VDLIKELLKP TWREGHLSKD  720
AHNRIVKKAV NKVIGTVQPH QIPLTFESVK QYLSASQSKI ARLVQGYIEK YGKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444561.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X1
TrEMBLA0A0D2TRA30.0A0A0D2TRA3_GOSRA; Uncharacterized protein
STRINGGorai.009G167600.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-37C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]