PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G165500.1
Common NameB456_009G165500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 196aa    MW: 21345.7 Da    PI: 10.2459
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G165500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-1966116255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrd +    + +r++lg+f tae+Aa a+++a+ k++g
  Gorai.009G165500.1  66 HYRGVRRRP-WGKYAAEIRDSTR---HgARVWLGTFETAEQAALAYDKAAFKMRG 116
                         8********.**********422...25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.70E-3065125No hitNo description
Gene3DG3DSA:3.30.730.108.8E-3265125IPR001471AP2/ERF domain
PfamPF008472.5E-1466116IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-2366126IPR016177DNA-binding domain
PROSITE profilePS5103223.80266124IPR001471AP2/ERF domain
SMARTSM003803.1E-3766130IPR001471AP2/ERF domain
PRINTSPR003673.5E-116778IPR001471AP2/ERF domain
PRINTSPR003673.5E-1190106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MQSHSDNVLP FNENDSQDMF IYQVLNEANA HGLGINNLHH FHASQRNQTA VASSMLEPAR  60
TIAKKHYRGV RRRPWGKYAA EIRDSTRHGA RVWLGTFETA EQAALAYDKA AFKMRGSKAL  120
LNFPAELGAS SVQRILRPNS SSKSLAKTDL DSGSSSRTVS TGTSKSESES ESSTTGKSHS  180
KGSESDHLNS ILKVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-3365124463ATERF1
3gcc_A9e-3365124463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid. {ECO:0000269|PubMed:10607299, ECO:0000269|PubMed:11768541, ECO:0000269|PubMed:11971137}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: The stronger expression mediated by Pseudomonas syringae tomato during an incompatible interaction (avirulent T1 avrPto strain) than during a compatible one (virulent T1 strain) requires the resistance PTO-R as well as the Pseudomonas resistance and fenthion sensitivity (PRF) gene products. This induction is independent of ethylene (ET), jasmonate (JA) and salicylic acid (SA), and subsequent transcription of PTI5 does not require de novo protein synthesis. Also induced by Xanthomonas oryzae strain PXOA avrXa10, by Pseudomonas fluorescens strain 2-79, by PTO and by cycloheximide. Seems to not be influenced by abiotic stresses (ET, SA, JA and wounding). {ECO:0000269|PubMed:10607299, ECO:0000269|PubMed:9878629}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605784.11e-127PREDICTED: pathogenesis-related genes transcriptional activator PTI5-like
SwissprotO046813e-55PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
TrEMBLA0A0D2S2G51e-141A0A0D2S2G5_GOSRA; Uncharacterized protein
STRINGGorai.009G165500.11e-142(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-40ethylene response factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]