PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G165400.1
Common NameB456_009G165400, LOC105767676
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 265aa    MW: 29549 Da    PI: 5.9245
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G165400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-19118168255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrd      k +r++lg+++taeeAa a+++a+ +++g
  Gorai.009G165400.1 118 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTYDTAEEAAMAYDKAASRIRG 168
                         7********.**********3...2234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-31117177IPR001471AP2/ERF domain
SMARTSM003801.8E-37118182IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-23118177IPR016177DNA-binding domain
CDDcd000183.87E-28118176No hitNo description
PROSITE profilePS5103223.446118176IPR001471AP2/ERF domain
PfamPF008476.7E-15118168IPR001471AP2/ERF domain
PRINTSPR003674.4E-11119130IPR001471AP2/ERF domain
PRINTSPR003674.4E-11142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAVESSHHAA ADESILENVW ANFIGGEEGD KARKPSVGSW EELPSLDGRD GSMEILQRLP  60
SLGRWISMGA DAWEDLLHGI IPPGNIPQSC NDVTANDIIS TRGHKANSMR VEKLATRHYR  120
GVRRRPWGKY AAEIRDSSRK GARVWLGTYD TAEEAAMAYD KAASRIRGPK ANLNFPLHTV  180
AKAMGIDDTK TNFNRCLSAT NGQGTEDFTD HRKRECRAWE QNSEVVMVEQ PQLKRMASIE  240
ECGYDVFWFQ DLGSDYLESL LSSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-26117179163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-26117179466ATERF1
3gcc_A3e-26117179466ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5822122e-56JX582212.1 Gossypium hirsutum clone NBRI_GE15002 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442702.10.0PREDICTED: ethylene-responsive transcription factor ERF091-like
TrEMBLA0A0D2QHE90.0A0A0D2QHE9_GOSRA; Uncharacterized protein
STRINGGorai.009G165400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.18e-38ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]