PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G161800.3

Common Name

B456_009G161800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 316aa MW: 35874.6 Da PI: 10.0454

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G161800.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.6	1e-31	87	140	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+++AtPk +l+lm+vkgL+++h+kSHLQ+YR+ Gorai.009G161800.3 87 PRLRWTPDLHLSFVHAVERLGGQDRATPKLVLQLMNVKGLSIAHIKSHLQMYRS 140 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.213	83	143	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-29	83	141	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.14E-15	86	141	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-22	87	142	IPR006447	Myb domain, plants
Pfam	PF00249	7.1E-9	88	139	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MMEMHGEEKR VNREVCSHKC TNFDLNEEAS CQDNDYVGKE GEVSVEEEEI EKRSTEEGSS 60 SNNNGGEGGG INDRRRTVRQ YVRSKLPRLR WTPDLHLSFV HAVERLGGQD RATPKLVLQL 120 MNVKGLSIAH IKSHLQMYRS KKLDESGQVL RKSNRSIKGR DEIRRMSLQR AAAVSSSPHR 180 RLRMENGGIV LAAESLENNF TLTRFRSPLY QRPLEFKPGF PRHHLEPNSL ISKAGVEKNG 240 FPKAGGLLSN EGQSNQIHGM EIRIGGMRRG WVLEEKRWQM ICNRWEIERE MSKHTFIGGH 300 YSTSSTQGSN TIPVL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	88	142	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	88	142	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-17	88	142	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	88	142	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	88	142	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	88	142	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	88	142	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	88	142	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	88	142	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	88	142	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	88	142	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	88	142	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447941.1	0.0	PREDICTED: two-component response regulator ARR10-like
TrEMBL	A0A0D2UN59	0.0	A0A0D2UN59_GOSRA; Uncharacterized protein
STRING	Gorai.009G161800.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	6e-38	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G161800.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]