PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G161800.1 | ||||||||
Common Name | B456_009G161800, LOC105771081 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 383aa MW: 43598.1 Da PI: 9.5767 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.2 | 1.4e-31 | 87 | 140 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+++AtPk +l+lm+vkgL+++h+kSHLQ+YR+ Gorai.009G161800.1 87 PRLRWTPDLHLSFVHAVERLGGQDRATPKLVLQLMNVKGLSIAHIKSHLQMYRS 140 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.213 | 83 | 143 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-29 | 83 | 141 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.25E-14 | 86 | 141 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-22 | 87 | 142 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.4E-9 | 88 | 139 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MMEMHGEEKR VNREVCSHKC TNFDLNEEAS CQDNDYVGKE GEVSVEEEEI EKRSTEEGSS 60 SNNNGGEGGG INDRRRTVRQ YVRSKLPRLR WTPDLHLSFV HAVERLGGQD RATPKLVLQL 120 MNVKGLSIAH IKSHLQMYRS KKLDESGQVL RKSNRSIKGR DEIRRMSLQR AAAVSSSPHR 180 RLRMENGGIV LAAESLENNF TLTRFRSPLY QRPLEFKPGF PRHHLEPNSL ISKAGVEKNG 240 FPKAGGLLSN EGQSNQIHGM EIRIGGMRRG WVLEEKRWQM ICNRWEIERE MSKHTFIGGH 300 YSTSSTQGSN TSTVGQFVSD NLSKFTSEFD APFLVELNQD KVMDREWLPD LQLRLSQRIG 360 IEDKKNTHCK GTHDINTRLS LS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-16 | 88 | 142 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-16 | 88 | 142 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-16 | 88 | 142 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-16 | 88 | 142 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012447941.1 | 0.0 | PREDICTED: two-component response regulator ARR10-like | ||||
TrEMBL | A0A0D2TKZ9 | 0.0 | A0A0D2TKZ9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G161800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM363 | 28 | 184 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 3e-37 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G161800.1 |
Entrez Gene | 105771081 |
Publications ? help Back to Top | |||
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