PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G153900.4
Common NameB456_009G153900
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 283aa    MW: 31136.6 Da    PI: 9.3277
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G153900.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1051.2e-3284157266
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........s 66 
                          g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a  ai el+++         +
  Gorai.009G153900.4  84 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAIEWLIKAAADAIAELPSLntsfpdtprQ 157
                         689************************************************************95544433330 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.3E-3385157IPR005333Transcription factor, TCP
PROSITE profilePS5136931.42286144IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEIDEIQTQQ GSKFSRVGNG RSESSRMGQK GSDNYYPDDE EGREVMKRAS ANGGGGDALA  60
DTAAANRLRG WHHSSRIIRV SRASGGKDRH SKVWTSKGLR DRRVRLSVTT AIQFYDLQDR  120
LGYDQPSKAI EWLIKAAADA IAELPSLNTS FPDTPRQWPV TQMDYFTMGL LGPSSSRNQS  180
SGFPGQMQQP QPILIPPFTV SGENNQKLQH FSFVPNTDHM IPVATAQPVL GSDYNLNFAI  240
SSGIAGFNRG TLQSNSPPFL PHHLQRFSSI EGSPPVENHH HH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2491145155Putative transcription factor PCF6
5zkt_B3e-2491145155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.10610.0flower|seedling| flowering
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443040.11e-108PREDICTED: transcription factor TCP2-like
TrEMBLA0A0D2UMM40.0A0A0D2UMM4_GOSRA; Uncharacterized protein
STRINGGorai.009G153900.11e-107(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-43TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]