PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G150000.2 | ||||||||
Common Name | B456_009G150000, LOC105769437 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 342aa MW: 38035.4 Da PI: 9.6938 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 54.3 | 3.4e-17 | 23 | 102 | 2 | 73 |
trihelix 2 WtkqevlaLiearremeerlr........rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 Wt +e+++Liea++ ++er rgk + +W++v ++++++g+ rs++qC++kw+nl ++ykk++e +++ ++ Gorai.009G150000.2 23 WTVNETMVLIEAKKMDDERRMkrsgdiegRGKPTELRWKWVEDYCWRKGCLRSQNQCNDKWDNLMRDYKKVREYQRRIAE 102 *************977666662222222224799**************************************99988644 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.12 | 15 | 87 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 3.2E-13 | 22 | 98 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MKLVMADQGG DNIVTREYRK GNWTVNETMV LIEAKKMDDE RRMKRSGDIE GRGKPTELRW 60 KWVEDYCWRK GCLRSQNQCN DKWDNLMRDY KKVREYQRRI AERGEGTHSN EGSSYWEMEK 120 NERKVKNLPS NMLRLIYERL EEVVEKKGDQ TAVAAGGSGL IPNIPYVMDR PITSVETSLP 180 PLLQHQLLAP IPAAIPLTLP APPQLPPPPI AAAAAAPLVQ PSPLSYAQPL PTVDTPAKRR 240 KRGTGNGEGS SGGTASANNS NEVGTAISKS ASIIAEAIQA SEEREERRHK DLVSLHERRL 300 KMEESKTEMD KRGLDGLVDA INKLANSILA LATHKKQSAP K* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012445522.1 | 0.0 | PREDICTED: uncharacterized protein LOC105769437 isoform X2 | ||||
TrEMBL | A0A0D2S1G6 | 0.0 | A0A0D2S1G6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G150000.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35640.1 | 3e-60 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G150000.2 |
Entrez Gene | 105769437 |
Publications ? help Back to Top | |||
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