PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G149900.3

Common Name

B456_009G149900, LOC105771172

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 172aa MW: 18514.1 Da PI: 8.3863

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G149900.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	146.3	8.5e-46	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+ Gorai.009G149900.3 13 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQ 103 7**************************************************************************************** PP DUF260 92 aelallkee 100 ++la++++e Gorai.009G149900.3 104 TQLAMAQAE 112 **99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.304	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-45	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MKESGRKQGA APPCAACKLL RRRCAQDCVF APYFPADEPQ KFANVHKVFG ASNVNKMLQE 60 LPVHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID ALQTQLAMAQ AEVVHLRVRQ 120 TASFSHHGFG PGSPSNSGSP SSKLMGSQAK PIFDMDMVVD HASFGESMWS C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-50	9	114	7	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-50	9	114	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX583811	2e-86	JX583811.1 Gossypium hirsutum clone NBRI_GE16953 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012448038.1	1e-125	PREDICTED: LOB domain-containing protein 4-like isoform X1
Refseq	XP_016688334.1	1e-125	PREDICTED: LOB domain-containing protein 4 isoform X1
Swissprot	Q9SHE9	1e-82	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A0D2UMG2	1e-124	A0A0D2UMG2_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8JJ52	1e-124	A0A1U8JJ52_GOSHI; LOB domain-containing protein 4 isoform X1
TrEMBL	A0A2P5RHP2	1e-124	A0A2P5RHP2_GOSBA; Uncharacterized protein
STRING	Gorai.009G149900.1	1e-125	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	6e-81	LOB domain-containing protein 4

Link Out ? help Back to Top
Phytozome	Gorai.009G149900.3
Entrez Gene	105771172

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]