PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G144800.1

Common Name

B456_009G144800, LOC105768363

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 388aa MW: 42336.6 Da PI: 9.9665

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G144800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.8	3.8e-15	81	168	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +Li+a e+ +l+rg+lk+++W+ev++ + +++ ++++pk qCk++++ ++k+yk +k+ + + s++++fd+l+ Gorai.009G144800.1 81 CWSEDATGVLIDAWGERYLELSRGNLKQKHWKEVADIVsSREDYRKTPKtdiQCKNRIDTVKKKYKLEKAKIAAG--GGPSKWVFFDKLD 168 7***********************************856666666644449*************99997..67778****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.6E-25	79	170	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MEEDEEIPSQ PSNAAAGSPS PSPSSLSPSS NGRITVTVAA APPSEPPPPE ESQLHEKTIV 60 LALPPPQQTK NSGGGGGRED CWSEDATGVL IDAWGERYLE LSRGNLKQKH WKEVADIVSS 120 REDYRKTPKT DIQCKNRIDT VKKKYKLEKA KIAAGGGPSK WVFFDKLDQL IGPTAKTAVN 180 VATAADGGSG GSTGLLSKVP MGIPVGIRSS LNPLRVSQLH EKQQQQQKQP RMVALKDQNK 240 MQIRKRAPMD TDSEEEEADS MDSLPPPMTG KRARRVVDKG VSSGGKGRKW GNSVRDLTQA 300 ILRFGEAYEQ AETAKLQQVV EMEKQRMKLA KELELQRMQF FMKTQLEISQ LKHGRRSGGI 360 GNSSNHHTKI NNSNNNNDNN NISGNSN*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MEEDEEIPSQ PSNAAAGSPS PSPSSLSPSS NGRITVTVAA APPSEPPPPE ESQLHEKTIV  60
LALPPPQQTK NSGGGGGRED CWSEDATGVL IDAWGERYLE LSRGNLKQKH WKEVADIVSS  120
REDYRKTPKT DIQCKNRIDT VKKKYKLEKA KIAAGGGPSK WVFFDKLDQL IGPTAKTAVN  180
VATAADGGSG GSTGLLSKVP MGIPVGIRSS LNPLRVSQLH EKQQQQQKQP RMVALKDQNK  240
MQIRKRAPMD TDSEEEEADS MDSLPPPMTG KRARRVVDKG VSSGGKGRKW GNSVRDLTQA  300
ILRFGEAYEQ AETAKLQQVV EMEKQRMKLA KELELQRMQF FMKTQLEISQ LKHGRRSGGI  360
GNSSNHHTKI NNSNNNNDNN NISGNSN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX615321	0.0	JX615321.1 Gossypium hirsutum clone NBRI_GE59245 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012443710.1	0.0	PREDICTED: trihelix transcription factor ASIL2
Swissprot	Q9LJG8	1e-115	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A0D2ULZ0	0.0	A0A0D2ULZ0_GOSRA; Uncharacterized protein
STRING	Gorai.009G144800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6262	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	5e-54	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Gorai.009G144800.1
Entrez Gene	105768363

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]