PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G143800.8 | ||||||||
Common Name | B456_009G143800, LOC105769266 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NF-YA | ||||||||
Protein Properties | Length: 326aa MW: 35623.8 Da PI: 9.4883 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 99.9 | 2.5e-31 | 171 | 226 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ep+YVNaKQy++Il+RRq Rakle+++kl +k rkpy+heSRh hA++R+RgsgG+F Gorai.009G143800.8 171 EPIYVNAKQYHAILRRRQYRAKLEAQNKL-IKVRKPYMHESRHLHAIKRARGSGGQF 226 8****************************.*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.2E-35 | 168 | 229 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.263 | 169 | 229 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 6.8E-26 | 171 | 226 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 5.7E-23 | 172 | 194 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 174 | 194 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 5.7E-23 | 203 | 226 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MCTYVVGCSS LGNSTESQVQ QSSISESLTL KMGVLPQHFH NNEQLSFQFQ DQDSSSTQST 60 GQSYPEVASA KDRNLYGQTL TSASSGGNGT HGKLVGNHAK LAYVTGTQDH VFPPSQGYRK 120 PIVHIPHHYA NPYLGSVAAT AYGSQAMIHH AHMMAMLPAR VPLPLDLKEG EPIYVNAKQY 180 HAILRRRQYR AKLEAQNKLI KVRKPYMHES RHLHAIKRAR GSGGQFLNTK KLQSKSTPTS 240 HGPDMSRSPQ LHLSANISVT DVHQPENFKD SGSANSCSDV TSASNSDEIF QQPDFRFYGY 300 PSCHTGEAMP GHAGHILLSS NSRAN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 5e-20 | 171 | 234 | 3 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012445239.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X2 | ||||
TrEMBL | A0A0D2TQ03 | 0.0 | A0A0D2TQ03_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G143800.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 2e-59 | nuclear factor Y, subunit A3 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G143800.8 |
Entrez Gene | 105769266 |
Publications ? help Back to Top | |||
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