PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G142200.1
Common NameB456_009G142200, LOC105771110
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 370aa    MW: 40949.4 Da    PI: 6.7917
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G142200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-181764148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W++eEde+l+++v+ +G g+W+++++  g+ R++k+c++rw +yl
  Gorai.009G142200.1 17 RGLWSPEEDEKLINYVTTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 64
                        788*******************************************97 PP
2Myb_DNA-binding48.32.3e-1570112145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         rg+++++E  l+++++  lG++ W+ Ia++++ gRt++++k++w+
  Gorai.009G142200.1  70 RGSFSPQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 112
                         899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-27967IPR009057Homeodomain-like
PROSITE profilePS5129425.1021268IPR017930Myb domain
SuperFamilySSF466899.73E-3014111IPR009057Homeodomain-like
SMARTSM007171.1E-131666IPR001005SANT/Myb domain
PfamPF002493.0E-161764IPR001005SANT/Myb domain
CDDcd001673.25E-122064No hitNo description
Gene3DG3DSA:1.10.10.608.3E-2568119IPR009057Homeodomain-like
PROSITE profilePS5129419.26369119IPR017930Myb domain
SMARTSM007171.5E-1569117IPR001005SANT/Myb domain
PfamPF002493.5E-1470113IPR001005SANT/Myb domain
CDDcd001672.95E-1172112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MMGHGHHSCC NKQKVKRGLW SPEEDEKLIN YVTTYGHGCW SSVPKLAGLQ RCGKSCRLRW  60
INYLRPDLKR GSFSPQEAAL IIELHSILGN RWAQIAKHLP GRTDNEVKNF WNSSIKKKFI  120
SHEVPALASF ADVHNFKPPD EAVDFVSLNV NPSLILSDQR DQLYLSPPLL QSFAQHHADF  180
KSNPSGDNVD LIHHHFPLTP MLPPPLSSAS SLDPSWPLPF ITSQHDLDHH QDKKHHVPVF  240
SNEVVHDIFN EKLMNSTAAI NLYDHPLMAA QTVPKLCEIL EGNLYNMPLT SVSLENIDPL  300
GSRLSTCLPI SAGSSYAHDM VVATNQMEFI DTIITSMPSA SSSSSSSLSA LSSGQYITNP  360
NLPSGGWDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31171187107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5780014e-98JX578001.1 Gossypium hirsutum clone NBRI_GE9934 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447965.10.0PREDICTED: transcription factor MYB24
TrEMBLA0A0D2TPY10.0A0A0D2TPY1_GOSRA; Uncharacterized protein
STRINGGorai.009G142200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.22e-80myb domain protein 26
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]