PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G141200.5
Common NameB456_009G141200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 536aa    MW: 59320.9 Da    PI: 9.2493
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G141200.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-05148170123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k F r  nL+ H r H
  Gorai.009G141200.5 148 FVCEICNKGFQRDQNLQLHRRGH 170
                         89*******************88 PP
2zf-C2H212.60.0004224246123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k +  +s+ k H +t+
  Gorai.009G141200.5 224 WKCEKCSKKYAVQSDWKAHSKTC 246
                         58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-5147170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.26E-7147170No hitNo description
SMARTSM003550.017148170IPR015880Zinc finger, C2H2-like
PfamPF121718.6E-5148170IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.949148170IPR007087Zinc finger, C2H2
PROSITE patternPS000280150170IPR007087Zinc finger, C2H2
SMARTSM0035567189219IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4212245IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.26E-7219244No hitNo description
SMARTSM00355140224244IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MMKSFMFHQQ QQQQQQQQQV LEENMSNLTS ASASGEASIS SGNRTEAGSN YPQQYFTTSQ  60
QPQTQPVKRK RNLPGNPGLV WVQKALYLNT ILFCYLFCSF PFLLSLSLSG TQFLMHFLGG  120
FFIFYFESDP DAEVIALSPK TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT  180
NKEVRKKVYV CPETNCVHHD PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KKYAVQSDWK  240
AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAVESA RAINPLLSPH QPGTAAASHM  300
NLQVPQFNPH DIKLQAFSLK KEQQSFTPLR PEIPPWLASQ PMLGAGPGPP HPIDLSSPSS  360
SIFSPRLDHQ DLTLHGTPSA NPSLVPTLPP YHHTALPSPH MSATALLQKA AHMGATMSRK  420
SGSSSVPSTV AAAASASLMR PHQQTHVSPD SAGTNNNTTT AGFGLDLPSR EELDVGSSSG  480
IIHGLAPFGN RKPAANAGDD DDDNNNIAGS AMWQFHQRIL LENNYTNSTH DDKRH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35220281364Zinc finger protein JACKDAW
5b3h_F2e-35220281364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174186KLKQRTNKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5271321e-171HQ527132.1 Gossypium herbaceum clone NBRI_D2_310 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442745.10.0PREDICTED: protein indeterminate-domain 7 isoform X1
SwissprotQ8H1F51e-114IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A0D2S0S20.0A0A0D2S0S2_GOSRA; Uncharacterized protein
STRINGGorai.009G141200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.18e-94indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]