PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G139800.1

Common Name

B456_009G139800, LOC105770915

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 252aa MW: 27011.4 Da PI: 8.4766

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G139800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.4	4.4e-40	17	77	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCdstntkfCyynny+l+qPr+fCk+CrryWtkGGalrn+PvGgg+rkn k+s Gorai.009G139800.1 17 EQEQLKCPRCDSTNTKFCYYNNYNLAQPRHFCKSCRRYWTKGGALRNIPVGGGTRKNSKRS 77 57899****************************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-28	13	72	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-33	19	75	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.357	21	75	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	23	59	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MQDPTGFQQM KAPVFPEQEQ LKCPRCDSTN TKFCYYNNYN LAQPRHFCKS CRRYWTKGGA 60 LRNIPVGGGT RKNSKRSSSS SDSSSQPKRQ SNPAPDSIRN QNLPDSSPPP TIPQQVLLSS 120 AVQNSVSNAD QTRMYVLSLD HQARKMTDSG GSFSSLLASS GQFGNLLNGL NPNGSGSETA 180 HTDDFGGNLA SGRGIGPSSD RDPRLRESNN NNDESYFGVQ GGGGGGDTNC WTGCSNGWPD 240 LAIYTPGSSF H*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447736.1	0.0	PREDICTED: dof zinc finger protein DOF3.1
Refseq	XP_016688490.1	0.0	PREDICTED: dof zinc finger protein DOF3.1-like
Swissprot	O82155	1e-40	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A0D2QFK3	0.0	A0A0D2QFK3_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8JDZ2	0.0	A0A1U8JDZ2_GOSHI; dof zinc finger protein DOF3.1-like
STRING	Gorai.009G139800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1269	28	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	4e-38	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Gorai.009G139800.1
Entrez Gene	105770915

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]