PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G135100.4
Common NameB456_009G135100, LOC105767919
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 716aa    MW: 79677.2 Da    PI: 6.6104
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G135100.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.32e-2160115156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         r+k +++t++q++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Gorai.009G135100.4  60 RKKYHRHTADQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 115
                         7999************************************************9877 PP
2START232.71e-722304532206
                         HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
               START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                         + ++a++el+k+a+a+ep+Wv+s+    e++n+de++++f+ + +      +s+ea+r++gvv+ +l++lv++++d + qW+e+++    k
  Gorai.009G135100.4 230 IVNQAMEELQKMATAGEPLWVRSVetgrEILNYDEYVKEFSVESSsngrpkRSIEASRETGVVFLDLPRLVQSFMDAN-QWKEMFPciisK 319
                         56789***********************************77666899******************************.************ PP

                         EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS
               START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162
                         a+t++vi+ g      ga+qlm+aelq+l+plvp R+++fvRy++ql+a++w+ivdvS+d  +++  ++s+v+++++pSg++i++k ngh+
  Gorai.009G135100.4 320 AATVDVICHGeapnknGAVQLMFAELQMLTPLVPtREVYFVRYCKQLSAEQWAIVDVSIDKVEENI-DASLVKCRKRPSGCIIQDKTNGHC 409
                         ****************************************************************98.9*********************** PP

                         EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         kv+wveh +++++++h l+r +v+sgla+ga++w+atlq+qce+
  Gorai.009G135100.4 410 KVIWVEHLECQKNTVHTLFRTIVRSGLAFGARHWMATLQHQCER 453
                         ******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-2346111IPR009057Homeodomain-like
SuperFamilySSF466892.09E-2048118IPR009057Homeodomain-like
PROSITE profilePS5007118.09157117IPR001356Homeobox domain
SMARTSM003898.6E-1959121IPR001356Homeobox domain
PfamPF000469.3E-1960115IPR001356Homeobox domain
CDDcd000861.43E-1664115No hitNo description
PROSITE patternPS00027092115IPR017970Homeobox, conserved site
PROSITE profilePS5084839.648220456IPR002913START domain
SuperFamilySSF559616.59E-34222453No hitNo description
CDDcd088756.33E-114224452No hitNo description
Gene3DG3DSA:3.30.530.208.7E-6227452IPR023393START-like domain
SMARTSM002348.5E-74229453IPR002913START domain
PfamPF018521.7E-58230453IPR002913START domain
SuperFamilySSF559611.51E-14483702No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MEVEEGDEGS GGGGGSGSKK DDTVEISSEN SGPARSRSED DLLDHDDDED DADKSKKKKR  60
KKYHRHTADQ IREMEALFKE SPHPDEKQRQ QLSKQLGLAP RQVKFWFQNR RTQIKAIQER  120
HENSLLKQEL DKLRDENKAM RETINKACCL NCGMATTAKD GSITAEEQQL RIENAKLKAE  180
VEKLRTVIGK YPPGASTTGS CSSENDQENR SSLDFYTGIF GLEKSRIMEI VNQAMEELQK  240
MATAGEPLWV RSVETGREIL NYDEYVKEFS VESSSNGRPK RSIEASRETG VVFLDLPRLV  300
QSFMDANQWK EMFPCIISKA ATVDVICHGE APNKNGAVQL MFAELQMLTP LVPTREVYFV  360
RYCKQLSAEQ WAIVDVSIDK VEENIDASLV KCRKRPSGCI IQDKTNGHCK VIWVEHLECQ  420
KNTVHTLFRT IVRSGLAFGA RHWMATLQHQ CERLVFFMAT NVPTKDSTGV ATLAGRKSIL  480
KLAQRMTWSF CHSIGASSYH TWNKVSTKTG EDIRVSSRKN LNDPGEPHGV IVCAVSSVWL  540
PVSPTLLFDF LRDESRRSEW DIMSNGGPVQ SIANLAKGKD RGNAVTIQAM KSKENSMWVL  600
QDSCTNAFES MVVFAHVDVT GIQSVITGCD SSNMAILPSG FSILPDGLES RPLVISSRHE  660
KSNDTEGGSL LTVAFQILTN SSPTAKLTME SVESVNTIVS CTLRNIKTSL QCEDG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15560KKKKRK
25561KKKKRKK
35761KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.9300.0seedling
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487527030.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing trichomes.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5309130.0AF530913.1 Gossypium hirsutum homeodomain protein GhHOX1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442963.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2
RefseqXP_012442964.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A0D2TJ790.0A0A0D2TJ79_GOSRA; Uncharacterized protein
STRINGGorai.009G135100.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]