PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G135100.3 | ||||||||
Common Name | B456_009G135100, LOC105767919 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 759aa MW: 83885.9 Da PI: 6.5142 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.2 | 2.2e-21 | 103 | 158 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t++q++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k Gorai.009G135100.3 103 RKKYHRHTADQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 158 7999************************************************9877 PP | |||||||
2 | START | 232.5 | 1.1e-72 | 273 | 496 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....k 78 + ++a++el+k+a+a+ep+Wv+s+ e++n+de++++f+ + + +s+ea+r++gvv+ +l++lv++++d + qW+e+++ k Gorai.009G135100.3 273 IVNQAMEELQKMATAGEPLWVRSVetgrEILNYDEYVKEFSVESSsngrpkRSIEASRETGVVFLDLPRLVQSFMDAN-QWKEMFPciisK 362 56789***********************************77666899******************************.************ PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162 a+t++vi+ g ga+qlm+aelq+l+plvp R+++fvRy++ql+a++w+ivdvS+d +++ ++s+v+++++pSg++i++k ngh+ Gorai.009G135100.3 363 AATVDVICHGeapnknGAVQLMFAELQMLTPLVPtREVYFVRYCKQLSAEQWAIVDVSIDKVEENI-DASLVKCRKRPSGCIIQDKTNGHC 452 ****************************************************************98.9*********************** PP EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 kv+wveh +++++++h l+r +v+sgla+ga++w+atlq+qce+ Gorai.009G135100.3 453 KVIWVEHLECQKNTVHTLFRTIVRSGLAFGARHWMATLQHQCER 496 ******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-23 | 89 | 154 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.26E-20 | 91 | 161 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.091 | 100 | 160 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.6E-19 | 102 | 164 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.0E-18 | 103 | 158 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.54E-17 | 107 | 158 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 135 | 158 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 39.648 | 263 | 499 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.42E-34 | 265 | 496 | No hit | No description |
CDD | cd08875 | 1.62E-113 | 267 | 495 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 9.7E-6 | 270 | 495 | IPR023393 | START-like domain |
SMART | SM00234 | 8.5E-74 | 272 | 496 | IPR002913 | START domain |
Pfam | PF01852 | 1.9E-58 | 273 | 496 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.65E-14 | 526 | 745 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010062 | Biological Process | negative regulation of trichoblast fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 759 aa Download sequence Send to blast |
MGVVDMTNPP TKDFFASPAL SLSLAGIFRD AGATAAAPTA SASMEVEEGD EGSGGGGGSG 60 SKKDDTVEIS SENSGPARSR SEDDLLDHDD DEDDADKSKK KKRKKYHRHT ADQIREMEAL 120 FKESPHPDEK QRQQLSKQLG LAPRQVKFWF QNRRTQIKAI QERHENSLLK QELDKLRDEN 180 KAMRETINKA CCLNCGMATT AKDGSITAEE QQLRIENAKL KAEVEKLRTV IGKYPPGAST 240 TGSCSSENDQ ENRSSLDFYT GIFGLEKSRI MEIVNQAMEE LQKMATAGEP LWVRSVETGR 300 EILNYDEYVK EFSVESSSNG RPKRSIEASR ETGVVFLDLP RLVQSFMDAN QWKEMFPCII 360 SKAATVDVIC HGEAPNKNGA VQLMFAELQM LTPLVPTREV YFVRYCKQLS AEQWAIVDVS 420 IDKVEENIDA SLVKCRKRPS GCIIQDKTNG HCKVIWVEHL ECQKNTVHTL FRTIVRSGLA 480 FGARHWMATL QHQCERLVFF MATNVPTKDS TGVATLAGRK SILKLAQRMT WSFCHSIGAS 540 SYHTWNKVST KTGEDIRVSS RKNLNDPGEP HGVIVCAVSS VWLPVSPTLL FDFLRDESRR 600 SEWDIMSNGG PVQSIANLAK GKDRGNAVTI QAMKSKENSM WVLQDSCTNA FESMVVFAHV 660 DVTGIQSVIT GCDSSNMAIL PSGFSILPDG LESRPLVISS RHEKSNDTEG GSLLTVAFQI 720 LTNSSPTAKL TMESVESVNT IVSCTLRNIK TSLQCEDG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 98 | 103 | KKKKRK |
2 | 98 | 104 | KKKKRKK |
3 | 100 | 104 | KKRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.930 | 0.0 | seedling |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 48752703 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing trichomes. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF530913 | 0.0 | AF530913.1 Gossypium hirsutum homeodomain protein GhHOX1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012442963.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein GLABRA 2 | ||||
Refseq | XP_012442964.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein GLABRA 2 | ||||
Swissprot | P46607 | 0.0 | HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2 | ||||
TrEMBL | A0A0D2TJ79 | 0.0 | A0A0D2TJ79_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G135100.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79840.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G135100.3 |
Entrez Gene | 105767919 |
Publications ? help Back to Top | |||
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