PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G133300.1

Common Name

B456_009G133300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 377aa MW: 43507.1 Da PI: 4.7355

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G133300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.7	4.7e-16	162	246	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+ +L++a + + +r++l+ W+ev++k+++ + er+ +qC+++++ l+k+ykk+k++ + ts ++s+++yf++++ Gorai.009G133300.1 162 WTEHETFVLLDAWGGRFLQRGRKSLQSEEWQEVAEKVSKVSMiERTDTQCRNRLDTLKKKYKKEKAMLAE-TSATTSKWVYFKKVD 246 ***********************************777666**********************9.578888****986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.4E-20	161	246	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-4	162	226	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.121	162	219	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MVLMDDIEDD ARYPPNQYGV SHQRCYGSLS RRKLPVRNFP YSRSMGNQDV NVDDEVEDEE 60 DFRGEAKNFE QNNVVWYIGK NMDNEDDDEL DDGEDDDDDG SDKPKGYNEN SNDVDLERHP 120 KKRKLKNLLL SYEFAPRVPA PAVAASSMPK PSHGGRNSLT DWTEHETFVL LDAWGGRFLQ 180 RGRKSLQSEE WQEVAEKVSK VSMIERTDTQ CRNRLDTLKK KYKKEKAMLA ETSATTSKWV 240 YFKKVDMSST ARWAYSNCAN GMDKMRDSPA DSESADSDED ISDGQPPKKR RFGRQYDEGS 300 SFRMLADSIH KFSNIYEKIE NSKRHQMLEL EKMRMEIHME LEMQKRRIME NAQAEIVKIQ 360 QGDEEDNDVS IENASG*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MVLMDDIEDD ARYPPNQYGV SHQRCYGSLS RRKLPVRNFP YSRSMGNQDV NVDDEVEDEE  60
DFRGEAKNFE QNNVVWYIGK NMDNEDDDEL DDGEDDDDDG SDKPKGYNEN SNDVDLERHP  120
KKRKLKNLLL SYEFAPRVPA PAVAASSMPK PSHGGRNSLT DWTEHETFVL LDAWGGRFLQ  180
RGRKSLQSEE WQEVAEKVSK VSMIERTDTQ CRNRLDTLKK KYKKEKAMLA ETSATTSKWV  240
YFKKVDMSST ARWAYSNCAN GMDKMRDSPA DSESADSDED ISDGQPPKKR RFGRQYDEGS  300
SFRMLADSIH KFSNIYEKIE NSKRHQMLEL EKMRMEIHME LEMQKRRIME NAQAEIVKIQ  360
QGDEEDNDVS IENASG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021298577.1	1e-173	trihelix transcription factor ASIL2-like
TrEMBL	A0A0D2QF63	0.0	A0A0D2QF63_GOSRA; Uncharacterized protein
STRING	Gorai.009G133300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM28180	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-39	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G133300.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]