PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G125700.1
Common NameB456_009G125700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 275aa    MW: 29593.2 Da    PI: 10.2601
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G125700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.3e-20145194255
                 AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr ++ +grW AeIrd +   g r r++lg+f+taeeAa+a++aa+++l+g
  Gorai.009G125700.1 145 SYRGVRKRP-WGRWSAEIRDrV---G-RCRHWLGTFDTAEEAARAYDAAARRLRG 194
                         69*******.**********55...2.59************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.39E-15144203No hitNo description
PROSITE profilePS5103222.879145202IPR001471AP2/ERF domain
PfamPF008475.0E-14145194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-29145202IPR001471AP2/ERF domain
SMARTSM003802.5E-32145208IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-21145202IPR016177DNA-binding domain
PRINTSPR003671.1E-10146157IPR001471AP2/ERF domain
PRINTSPR003671.1E-10168184IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MVDFRSLQAV PFFDTPQTSE ASWPCDRPAG SSQFPSCSSM IAPTYFYKRN YPPVCTEFAG  60
VLSLDGFDKN RENAVETTIE SGPEMPPVLD GIAVVVGQHV LFGNKANPTT SNRSSDGDRP  120
GFISVSQRFG ANKRDLGSSV SVQKSYRGVR KRPWGRWSAE IRDRVGRCRH WLGTFDTAEE  180
AARAYDAAAR RLRGSKAKTN FEIPSVLPAL ASPSTSSSSS EAKKVKGKAK TVRKCAVVTS  240
VDQLFSSDSS FGGNEGKGKS GLVLTTSKAT TSNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-17144203161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A1e-161462011571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442798.10.0PREDICTED: ethylene-responsive transcription factor ERF084
TrEMBLA0A0D2TPB10.0A0A0D2TPB1_GOSRA; Uncharacterized protein
STRINGGorai.009G125700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.12e-25ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]