PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G122000.4 | ||||||||
Common Name | B456_009G122000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | AP2 | ||||||||
Protein Properties | Length: 353aa MW: 39672.5 Da PI: 7.1405 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.5 | 1.8e-14 | 43 | 102 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+ ++++lg + +e Aa a++ a++k++g Gorai.009G122000.4 43 STYRGVTRHRWTGRFEAHLWDkNCWNEsqkKKgRQVYLGAYADEEAAAHAYDLAALKYWG 102 56*******************999977776447*************************98 PP | |||||||
2 | AP2 | 52.3 | 1.4e-16 | 143 | 194 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Gorai.009G122000.4 143 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 194 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.63E-16 | 43 | 112 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.1E-26 | 44 | 116 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-16 | 44 | 111 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.7E-11 | 44 | 102 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.033 | 44 | 110 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-6 | 45 | 56 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.41E-24 | 143 | 204 | No hit | No description |
SuperFamily | SSF54171 | 5.89E-18 | 143 | 204 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.4E-12 | 143 | 194 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-25 | 144 | 208 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-18 | 144 | 203 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.36 | 144 | 202 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-6 | 184 | 204 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MAKISHQNQK NGSGNEKTAA QPTTKLKRTR KTVPRHSPPQ RSSTYRGVTR HRWTGRFEAH 60 LWDKNCWNES QKKKGRQVYL GAYADEEAAA HAYDLAALKY WGQDTVLNFP VSTYEKELKE 120 MESQSKEEYI GSLRSSGFAR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYATQEE 180 AAMAYDMAAI EYRGLNAVTN FDLSRYIGWL HPNDQSDSNN SSNPQQNFNG DTNSTPSPNH 240 DTKLEISIQS QTYCTSDTRL DDSNSNGSSS SASSALGHLL KSSKIKEMLD RTSEAACPST 300 PPEPNVPRRS FPDYIQTYFD CQDSSSYTED DDIIFGDLDS LAIPMFHCEL DG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012447649.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 | ||||
Swissprot | Q94AN4 | 1e-122 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A0D2RZA0 | 0.0 | A0A0D2RZA0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G122000.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 4e-96 | ARIA-interacting double AP2 domain protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G122000.4 |
Publications ? help Back to Top | |||
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