PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G122000.3
Common NameB456_009G122000, LOC105770840
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 355aa    MW: 39954.9 Da    PI: 7.6515
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G122000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.51.8e-1443102155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  ++n    k+ ++++lg +  +e Aa a++ a++k++g
  Gorai.009G122000.3  43 STYRGVTRHRWTGRFEAHLWDkNCWNEsqkKKgRQVYLGAYADEEAAAHAYDLAALKYWG 102
                         56*******************999977776447*************************98 PP
2AP252.31.4e-16145196155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Gorai.009G122000.3 145 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 196
                         89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.6E-1643111IPR016177DNA-binding domain
SMARTSM003805.5E-2544116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-1644111IPR001471AP2/ERF domain
PfamPF008474.7E-1144102IPR001471AP2/ERF domain
PROSITE profilePS5103220.03344110IPR001471AP2/ERF domain
PRINTSPR003674.0E-64556IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-18145206IPR016177DNA-binding domain
CDDcd000182.07E-24145206No hitNo description
PfamPF008471.4E-12145196IPR001471AP2/ERF domain
SMARTSM003803.5E-25146210IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-18146205IPR001471AP2/ERF domain
PROSITE profilePS5103218.36146204IPR001471AP2/ERF domain
PRINTSPR003674.0E-6186206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MAKISHQNQK NGSGNEKTAA QPTTKLKRTR KTVPRHSPPQ RSSTYRGVTR HRWTGRFEAH  60
LWDKNCWNES QKKKGRQVYL GAYADEEAAA HAYDLAALKY WGQDTVLNFP LATYEKELKE  120
MESQSKEEYI GSLRRKSSGF ARGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ  180
EEAAMAYDMA AIEYRGLNAV TNFDLSRYIG WLHPNDQSDS NNSSNPQQNF NGDTNSTPSP  240
NHDTKLEISI QSQTYCTSDT RLDDSNSNGS SSSASSALGH LLKSSKIKEM LDRTSEAACP  300
STPPEPNVPR RSFPDYIQTY FDCQDSSSYT EDDDIIFGDL DSLAIPMFHC ELDG*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447649.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
SwissprotQ94AN41e-126AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D2QEB10.0A0A0D2QEB1_GOSRA; Uncharacterized protein
STRINGGorai.009G122000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-100ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]