PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G122000.2 | ||||||||
Common Name | B456_009G122000, LOC105770840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | AP2 | ||||||||
Protein Properties | Length: 352aa MW: 39579.5 Da PI: 7.6524 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.9 | 3.8e-11 | 43 | 99 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g + +e Aa a++ a++k++g Gorai.009G122000.2 43 STYRGVTRHRWTGRFEAHLWDkNCWNEsQKKKGRQGAYADEEAAAHAYDLAALKYWG 99 56*******************99998886655566888888**************98 PP | |||||||
2 | AP2 | 52.3 | 1.4e-16 | 142 | 193 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Gorai.009G122000.2 142 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 193 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.83E-14 | 43 | 108 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-12 | 44 | 108 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.545 | 44 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-18 | 44 | 113 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-7 | 44 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-6 | 45 | 56 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.32E-24 | 142 | 203 | No hit | No description |
Pfam | PF00847 | 1.4E-12 | 142 | 193 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.89E-18 | 142 | 203 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-18 | 143 | 202 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.36 | 143 | 201 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-25 | 143 | 207 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-6 | 183 | 203 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MAKISHQNQK NGSGNEKTAA QPTTKLKRTR KTVPRHSPPQ RSSTYRGVTR HRWTGRFEAH 60 LWDKNCWNES QKKKGRQGAY ADEEAAAHAY DLAALKYWGQ DTVLNFPLAT YEKELKEMES 120 QSKEEYIGSL RRKSSGFARG VSKYRGVARH HHNGRWEARI GRVFGNKYLY LGTYATQEEA 180 AMAYDMAAIE YRGLNAVTNF DLSRYIGWLH PNDQSDSNNS SNPQQNFNGD TNSTPSPNHD 240 TKLEISIQSQ TYCTSDTRLD DSNSNGSSSS ASSALGHLLK SSKIKEMLDR TSEAACPSTP 300 PEPNVPRRSF PDYIQTYFDC QDSSSYTEDD DIIFGDLDSL AIPMFHCELD G* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012447650.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X2 | ||||
Swissprot | Q94AN4 | 1e-121 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A0D2TNW8 | 0.0 | A0A0D2TNW8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G122000.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 1e-95 | ARIA-interacting double AP2 domain protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G122000.2 |
Entrez Gene | 105770840 |
Publications ? help Back to Top | |||
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