PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G120900.2

Common Name

B456_009G120900, LOC105768393

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 486aa MW: 53080.5 Da PI: 6.3446

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G120900.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.7	5.6e-33	254	308	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYRl Gorai.009G120900.2 254 KPRMRWTPELHECFVEAVSKLDGPEKATPKGVLKLMNVEGLTIYHVKSHLQKYRL 308 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.456	251	311	IPR017930	Myb domain
SuperFamily	SSF46689	9.14E-18	252	308	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.2E-31	253	309	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-25	254	309	IPR006447	Myb domain, plants
Pfam	PF00249	4.1E-9	256	307	IPR001005	SANT/Myb domain
Pfam	PF14379	2.6E-20	344	391	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence Send to blast
MKVGISSKTI NHPSFVSVTQ SDPSKGIGES YPIAVSPIHN FPSRDLEGPS WLTGECSSLF 60 PLKKNELNSG PSSPSSPSSH AKGAFSHSSV FCTSLYLSSS STSETQRQLG NFPFLPHPPT 120 CHQFISAVDS SKSPVVFTED LCNPYDVDHS EVIMKDFHKF PGDARDDGCF HGMHCERDNF 180 ILTEQVELHF LSDELDIAIN DHGENPRVEE ICESPQPSSK PTVGLTCNRN SASATPSMSA 240 AVSPALSGPA AVHKPRMRWT PELHECFVEA VSKLDGPEKA TPKGVLKLMN VEGLTIYHVK 300 SHLQKYRLAK YMPEKKEEKK TWSSGEKKAA LSIGESDGKK NGGMHITEAL QMQIEVQKQL 360 HEQLELQRLL QLRIEEQARY LQKILEEQQK AGSALIPTLS LSAPTDPPSQ NSELQQPSSP 420 SAVVSASQHS ESKTESSSAS SLPSKHKANG VGVNECKTES SLKRFRFEDK PESAIDEAVV 480 ENPVQ*

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence Send to blast

MKVGISSKTI NHPSFVSVTQ SDPSKGIGES YPIAVSPIHN FPSRDLEGPS WLTGECSSLF  60
PLKKNELNSG PSSPSSPSSH AKGAFSHSSV FCTSLYLSSS STSETQRQLG NFPFLPHPPT  120
CHQFISAVDS SKSPVVFTED LCNPYDVDHS EVIMKDFHKF PGDARDDGCF HGMHCERDNF  180
ILTEQVELHF LSDELDIAIN DHGENPRVEE ICESPQPSSK PTVGLTCNRN SASATPSMSA  240
AVSPALSGPA AVHKPRMRWT PELHECFVEA VSKLDGPEKA TPKGVLKLMN VEGLTIYHVK  300
SHLQKYRLAK YMPEKKEEKK TWSSGEKKAA LSIGESDGKK NGGMHITEAL QMQIEVQKQL  360
HEQLELQRLL QLRIEEQARY LQKILEEQQK AGSALIPTLS LSAPTDPPSQ NSELQQPSSP  420
SAVVSASQHS ESKTESSSAS SLPSKHKANG VGVNECKTES SLKRFRFEDK PESAIDEAVV  480
ENPVQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-26	254	311	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-26	254	311	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-26	254	311	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-26	254	311	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-26	254	311	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-26	254	311	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-26	254	311	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-26	254	311	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012443746.1	0.0	PREDICTED: protein PHR1-LIKE 1-like
Refseq	XP_012443747.1	0.0	PREDICTED: protein PHR1-LIKE 1-like
Refseq	XP_012443748.1	0.0	PREDICTED: protein PHR1-LIKE 1-like
TrEMBL	A0A0D2TNZ6	0.0	A0A0D2TNZ6_GOSRA; Uncharacterized protein
STRING	Gorai.009G120900.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	5e-93	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G120900.2
Entrez Gene	105768393

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]