PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G116000.3
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LSD
Protein Properties Length: 170aa    MW: 17851.8 Da    PI: 8.2415
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G116000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD140.16.1e-13731125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        C+ Cr++L YPrGA++V+CalC+t+
  Gorai.009G116000.3  7 CSRCRNILLYPRGATNVCCALCNTI 31
                        9**********************97 PP
2zf-LSD142.98.2e-144670125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        CggCrtlL+Y+ GA+sVRC++C+ +
  Gorai.009G116000.3 46 CGGCRTLLMYTCGATSVRCSCCNII 70
                        **********************976 PP
3zf-LSD147.23.7e-1584108125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         Cg+Crt+L+YP+GApsV+Ca+C+ V
  Gorai.009G116000.3  84 CGHCRTTLMYPYGAPSVKCAVCHYV 108
                         **********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.3E-12534IPR005735Zinc finger, LSD1-type
PfamPF069433.7E-11731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.7E-144373IPR005735Zinc finger, LSD1-type
PfamPF069433.1E-114669IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.7E-1281111IPR005735Zinc finger, LSD1-type
PfamPF069434.8E-1484108IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MQSEVVCSRC RNILLYPRGA TNVCCALCNT ITQVPPPGME MAQLVCGGCR TLLMYTCGAT  60
SVRCSCCNII NHVTASNPMA HINCGHCRTT LMYPYGAPSV KCAVCHYVTN VGVSTGNVRC  120
PLPASRPNAT GTMPSTSTSQ TVVVENPMSV DESGKLVSNV VVGITTDKK*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, roots, rosette leaves, stems, inflorescences and flowers. {ECO:0000269|PubMed:20456049}.
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of reactive oxygen-induced cell death, cold stress-induced cell death, pathogen-induced hypersensitive response (HR), basal disease resistance. May be involved in the induction of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. Antagonizes the function of BZIP10, a positive regulator of cell death, by interacting in the cytoplasm and preventing its nuclear localization. Controls lysigenous aerenchyma in hypocotyls under root hypoxia. Required for leaf acclimation in response to excess excitation energy. {ECO:0000269|PubMed:10550898, ECO:0000269|PubMed:11595797, ECO:0000269|PubMed:11844114, ECO:0000269|PubMed:12732715, ECO:0000269|PubMed:15347794, ECO:0000269|PubMed:16957775, ECO:0000269|PubMed:18055613, ECO:0000269|PubMed:18790826, ECO:0000269|PubMed:20456049, ECO:0000269|PubMed:21097903}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By methyl viologen. {ECO:0000269|PubMed:20456049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446873.11e-115PREDICTED: protein LSD1-like isoform X1
RefseqXP_012446874.11e-115PREDICTED: protein LSD1-like isoform X1
RefseqXP_016688784.11e-115PREDICTED: protein LSD1-like isoform X1
RefseqXP_016688785.11e-115PREDICTED: protein LSD1-like isoform X1
SwissprotP940771e-66LSD1_ARATH; Protein LSD1
TrEMBLA0A2P5VX731e-115A0A2P5VX73_GOSBA; Uncharacterized protein
STRINGGorai.009G116000.11e-116(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.75e-69LSD family protein
Publications ? help Back to Top
  1. Spedaletti V, et al.
    Characterization of a lysine-specific histone demethylase from Arabidopsis thaliana.
    Biochemistry, 2008. 47(17): p. 4936-47
    [PMID:18393445]
  2. Szechyńska-Hebda M,Czarnocka W,Hebda M,Bernacki MJ,Karpiński S
    PAD4, LSD1 and EDS1 regulate drought tolerance, plant biomass production, and cell wall properties.
    Plant Cell Rep., 2016. 35(3): p. 527-39
    [PMID:26754794]
  3. Czarnocka W, et al.
    The dual role of LESION SIMULATING DISEASE 1 as a condition-dependent scaffold protein and transcription regulator.
    Plant Cell Environ., 2017. 40(11): p. 2644-2662
    [PMID:28555890]
  4. Bernacki MJ, et al.
    LSD1-, EDS1- and PAD4-dependent conditional correlation among salicylic acid, hydrogen peroxide, water use efficiency and seed yield in Arabidopsis thaliana.
    Physiol Plant, 2019. 165(2): p. 369-382
    [PMID:30461017]