PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G115000.1

Common Name

B456_009G115000, LOC105767978

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YA

Protein Properties

Length: 204aa MW: 22486.8 Da PI: 8.8657

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G115000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	105.3	5.2e-33	108	164	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+kl +ksrkpylheSRh hAlrR+RgsgGrF Gorai.009G115000.1 108 EEPVFVNAKQYHGILRRRQSRAKAESENKL-AKSRKPYLHESRHLHALRRARGSGGRF 164 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.4E-36	106	167	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.039	107	167	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.5E-28	109	164	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	6.7E-24	110	132	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	112	132	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	6.7E-24	141	164	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MTSSAHDLSD NNEVDEQKKH SEFSDHSSSP VTGLSPSSIT TPNMPYTTPQ HAVAPAAYPY 60 PDPYYRSIFA PYDAQSYPPQ PYGGQPMVHL QLMGIQQAGV PLPSDAVEEP VFVNAKQYHG 120 ILRRRQSRAK AESENKLAKS RKPYLHESRH LHALRRARGS GGRFLNSKKN ENKQNEAAPS 180 DKSQSNINLN SDKNELASTE GNC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	6e-22	107	172	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM422775	1e-62	AM422775.1 Antirrhinum majus mRNA for YA6 (nf-YA gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012443082.1	1e-150	PREDICTED: nuclear transcription factor Y subunit A-7-like
Refseq	XP_012443083.1	1e-150	PREDICTED: nuclear transcription factor Y subunit A-7-like
Refseq	XP_012443084.1	1e-150	PREDICTED: nuclear transcription factor Y subunit A-7-like
Refseq	XP_012443085.1	1e-150	PREDICTED: nuclear transcription factor Y subunit A-7-like
Refseq	XP_016688766.1	1e-150	PREDICTED: nuclear transcription factor Y subunit A-7-like
Refseq	XP_016688767.1	1e-150	PREDICTED: nuclear transcription factor Y subunit A-7-like
Swissprot	Q84JP1	4e-70	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A0D2Q4N4	1e-148	A0A0D2Q4N4_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8JEL5	1e-148	A0A1U8JEL5_GOSHI; nuclear transcription factor Y subunit A-7-like
TrEMBL	A0A2P5QSQ2	1e-148	A0A2P5QSQ2_GOSBA; Uncharacterized protein
STRING	Gorai.009G115000.1	1e-149	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4168	27	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	2e-54	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Gorai.009G115000.1
Entrez Gene	105767978

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]