PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G112300.1

Common Name

B456_009G112300, LOC105767492

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 322aa MW: 36232.1 Da PI: 9.3693

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G112300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.9	8.5e-32	52	105	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+ave+LGG+e+AtPk +l+lm+++gL+++hvkSHLQ+YR+ Gorai.009G112300.1 52 PRLRWTPELHLCFVRAVERLGGQERATPKLVLQLMNIEGLSIAHVKSHLQMYRS 105 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.916	48	108	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-29	48	106	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.87E-15	49	106	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.2E-23	52	107	IPR006447	Myb domain, plants
Pfam	PF00249	7.9E-10	53	104	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MHKINPLNLD EDEEADDGIS KTINSTASPS NSSEKKASAS SGVRPYVRSK TPRLRWTPEL 60 HLCFVRAVER LGGQERATPK LVLQLMNIEG LSIAHVKSHL QMYRSKKIDD KGQVVNNRHL 120 LGSVNYCSQN LRYQSMLQDQ RVISDISWSA FAGNRINCRR RAGFCRSDMT KEVGSKARNE 180 VFYMNNNPIF SQQPVREIEG FQDIIDDCAE VQPILILPSF PNKWPGRGAE RQVRVAKRKA 240 VDDEDLDLSL SLSTKMGQEV RRKTCNEEEA ANSNLSLSLS SPSKTEMYSL NVNMVSKRSN 300 LKEGHDSTRY LKLASTLDLT I*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-19	53	107	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-19	53	107	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-19	53	107	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-19	53	107	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012442497.1	0.0	PREDICTED: uncharacterized protein LOC105767492 isoform X2
TrEMBL	A0A0D2UK02	0.0	A0A0D2UK02_GOSRA; Uncharacterized protein
STRING	Gorai.009G112300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-40	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G112300.1
Entrez Gene	105767492

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]