PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G107900.4 | ||||||||
Common Name | B456_009G107900, LOC105768287 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GATA | ||||||||
Protein Properties | Length: 330aa MW: 36132.4 Da PI: 6.8774 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.9 | 3.4e-19 | 248 | 281 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C +t+Tp+WR+gp g+ktLCnaCG++yr+ + Gorai.009G107900.4 248 CTHCEVTETPQWREGPMGPKTLCNACGVRYRSGR 281 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.4E-17 | 242 | 292 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.477 | 246 | 278 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.03E-15 | 247 | 305 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.8E-14 | 247 | 279 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.18E-15 | 247 | 294 | No hit | No description |
Pfam | PF00320 | 3.8E-17 | 248 | 281 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 248 | 273 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MSKSWFDKGY NGVGPNDDFF DDVIKYLDLP LEDVEGPDGN GSIEDVNNFL LPVEENNDGG 60 EDWDCDFENL EPPPTNVLAS LSSGFYGDFF SDSLAQNLTD SCDGSSQLNQ LSSTTSITPH 120 SDCTDVKGST WFQTSSPVSV LESSSPCSAA NPTPIDPKLS FLVKKRGRSK RRPASTFNQQ 180 FIFSSISSTS SASRGTNYVV GSESESENNP TEKPAKKRQK KKKNLTLLSG CNETKKPPSL 240 QPIVIMKCTH CEVTETPQWR EGPMGPKTLC NACGVRYRSG RLFPEYRPAA SPTFVASMHS 300 NSHKKVVEMR KKAKLPLSLS SIPPKMSFR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012443598.1 | 0.0 | PREDICTED: GATA transcription factor 11-like | ||||
TrEMBL | A0A0D2THJ0 | 0.0 | A0A0D2THJ0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G107900.1 | 1e-164 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08000.2 | 5e-40 | GATA transcription factor 10 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G107900.4 |
Entrez Gene | 105768287 |
Publications ? help Back to Top | |||
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