PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G107900.2
Common NameB456_009G107900, LOC105768287
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 330aa    MW: 36132.4 Da    PI: 6.8774
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G107900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.93.4e-19248281134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C++C +t+Tp+WR+gp g+ktLCnaCG++yr+ +
  Gorai.009G107900.2 248 CTHCEVTETPQWREGPMGPKTLCNACGVRYRSGR 281
                         *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.4E-17242292IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.477246278IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-15247305No hitNo description
Gene3DG3DSA:3.30.50.101.8E-14247279IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.18E-15247294No hitNo description
PfamPF003203.8E-17248281IPR000679Zinc finger, GATA-type
PROSITE patternPS003440248273IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MSKSWFDKGY NGVGPNDDFF DDVIKYLDLP LEDVEGPDGN GSIEDVNNFL LPVEENNDGG  60
EDWDCDFENL EPPPTNVLAS LSSGFYGDFF SDSLAQNLTD SCDGSSQLNQ LSSTTSITPH  120
SDCTDVKGST WFQTSSPVSV LESSSPCSAA NPTPIDPKLS FLVKKRGRSK RRPASTFNQQ  180
FIFSSISSTS SASRGTNYVV GSESESENNP TEKPAKKRQK KKKNLTLLSG CNETKKPPSL  240
QPIVIMKCTH CEVTETPQWR EGPMGPKTLC NACGVRYRSG RLFPEYRPAA SPTFVASMHS  300
NSHKKVVEMR KKAKLPLSLS SIPPKMSFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443598.10.0PREDICTED: GATA transcription factor 11-like
TrEMBLA0A0D2THJ00.0A0A0D2THJ0_GOSRA; Uncharacterized protein
STRINGGorai.009G107900.11e-164(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08000.25e-40GATA transcription factor 10
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]