PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G100100.2 | ||||||||
Common Name | B456_009G100100, LOC105770986 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 311aa MW: 33698.7 Da PI: 9.6141 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.7 | 2.9e-39 | 63 | 123 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nkk++ Gorai.009G100100.2 63 PEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKKK 123 67899*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-35 | 47 | 119 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.1E-32 | 66 | 121 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.469 | 67 | 121 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 69 | 105 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MVFPSVPVYL DPPNWQQLNH QQGACSENPQ LPPLPTDHHV GASGSIRAGS MADRARLAKV 60 PQPEAALKCP RCESTNTKFC YFNNYSLTQP RHFCKTCRRY WTRGGALRNV PVGGGCRRNK 120 KKKSSSSSKP SASAERQSGS NSINTVIPSE ITAHLPHQTS HLPFMASLQN FSQYGIGNIG 180 LNFGGIHGQI GATSGGSERS DMGFQIGTNS DMSNAILSVR SGTHQQFPFI EPTNGLYPLQ 240 SEYIGASPSM VEESQLLRCT SSSSRVSQRG PVKMENNNQG LNLSRPLLGV SDQNNQYWGG 300 NSWTDLSGLK * |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00281 | DAP | Transfer from AT2G28810 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012447826.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 | ||||
TrEMBL | A0A0D2RXF5 | 0.0 | A0A0D2RXF5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G100100.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28810.1 | 9e-57 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G100100.2 |
Entrez Gene | 105770986 |
Publications ? help Back to Top | |||
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