PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G091200.1
Common NameB456_009G091200, LOC105768877
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 704aa    MW: 76140.4 Da    PI: 6.0217
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G091200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21.1e-06279299526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f++ G C+ Gd+C +aHg
  Gorai.009G091200.1 279 PCPEFRK-GSCRQGDNCEYAHG 299
                         8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.49E-1472150IPR020683Ankyrin repeat-containing domain
SMARTSM002480.09775105IPR002110Ankyrin repeat
PROSITE profilePS5029715.93775150IPR020683Ankyrin repeat-containing domain
PfamPF127968.9E-875142IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.2E-1576150IPR020683Ankyrin repeat-containing domain
CDDcd002046.44E-1377150No hitNo description
SMARTSM002480.0012110142IPR002110Ankyrin repeat
PROSITE profilePS5008812.235110145IPR002110Ankyrin repeat
SMARTSM003565.0E-5274300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-4278301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.094279301IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4279299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-4307337IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.174309333IPR000571Zinc finger, CCCH-type
SMARTSM0035625309332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MCSGPKRKPT QTGLTMEGES RKEDEVPQKF SVLLELSASN DLIGFKISVE EGGHDMDEAG  60
LWYGRRLGSK KMGFEERTPL LIASLFGSQD VVNYIVERGR VDVNRACGSD GATALHCAAA  120
GGSFYSPEIV KILLDASADI DSLDANGNRP GDLIAPACNS AFGLRKKRLE SLLKGSDCVG  180
EIEGLPAQLG NEMGGLEEQE GSMPRVSKDG TEKKEYPVDL TLPDIKNGIY GTDEFRMYTF  240
KVKPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFRKGSCRQ GDNCEYAHGI  300
FECWLHPAQY RTRLCKDETN CTRRVCFFAH KPEELRPLYA STGSAVPSPR SYSAAGSSLD  360
MGSMSPLALG SPSVMIPPTS TPPLTPTGAS SPMGGSMWPS QSNIIPPTLQ LPGSRLKTTL  420
SARDMDLDME LLGLECRRRR QQQQQLIDEI SGLSSPTSWN NSTAFSAAGD RTGELNRFGG  480
VKPTNLDDIF GSLDPSIMPQ IQGLSLDAAA SQLQSPTGVH TRQNINQQLR ASYPTNLPSS  540
PVRASSSFGI DPSGPSAAAV LSSRSSAFAK RSQSFIERTA VNRHSGLSSP ASSASAMPSN  600
LSDWGSPDGK LDWGIQGEEL NKLRKSASFG FRSSGSNLGN APRSISSTTD EPDVSWVQSL  660
VVDPPPAGQL SFEEEQCHRN PGGAEMLPAW VEQLYMDQKQ MVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.10030.0seedling
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487520450.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5775781e-163JX577578.1 Gossypium hirsutum clone NBRI_GE9431 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444569.10.0PREDICTED: zinc finger CCCH domain-containing protein 66 isoform X1
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A0D2UIP40.0A0A0D2UIP4_GOSRA; Uncharacterized protein
STRINGGorai.009G091200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]