PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G088600.1
Common NameB456_009G088600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 302aa    MW: 32102.7 Da    PI: 4.4926
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G088600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-05275298123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         ++C+ C+ksF +   L++H +  H
  Gorai.009G088600.1 275 FSCGSCNKSFGSEGGLESHKKAkH 298
                         89*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.863275301IPR007087Zinc finger, C2H2
PROSITE patternPS000280277298IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEFWGIEVKS GQPIKADPGA NYVIHLSQAS LGESKNKAES VPLYVNVDGK KLILGTLSHQ  60
SCPQLSFDLV FDEEFELSHN WKNGSVYFLG YKTFIPEEGG MSSEEESEEE EDEELPVAAA  120
AAAAVNGKAK PDAKTAKANA GKPDAVKQSG KIAEPSNNRK SEDEDDDDES EDESGSDEED  180
DSDDDDESDE MSMDESSDDE DEETPKKVES SKKRPVESSK KRPAEAATPA SAKKAKSAVT  240
PQKTDGKKGG HTATPHPAKQ SGKNSAKSPK SGGQFSCGSC NKSFGSEGGL ESHKKAKHGG  300
K*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.33130.0seedling
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during fertilization, while it is repressed during seed development. {ECO:0000269|PubMed:15082924}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in ovaries. Accumulates predominantly in the micropylar region of the ovule's integument. {ECO:0000269|PubMed:15082924}.
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5274481e-178HQ527448.1 Gossypium herbaceum clone NBRI_B_2368 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446322.11e-165PREDICTED: histone deacetylase HDT1 isoform X1
SwissprotQ6V9I61e-66HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLA0A0D2RVL30.0A0A0D2RVL3_GOSRA; Uncharacterized protein
STRINGGorai.009G088600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20272667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.22e-37histone deacetylase 3
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]