PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G086200.4

Common Name

B456_009G086200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 336aa MW: 37845 Da PI: 7.433

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G086200.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.2	2.7e-11	27	65	2	40
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 ++ k rr+++NReAAr+sR+RKka++++Le +L + Gorai.009G086200.4 27 PDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLAQ 65 678999************************985555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.2E-8	21	72	No hit	No description
SMART	SM00338	7.0E-8	26	93	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.14	28	72	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.2E-8	28	70	IPR004827	Basic-leucine zipper domain
CDD	cd14708	5.15E-22	30	82	No hit	No description
SuperFamily	SSF57959	5.3E-7	30	73	No hit	No description
PROSITE pattern	PS00036	0	33	48	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.7E-30	111	186	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MASDISSLNQ SAAQEKGRGS SSSEKQPDAK TLRRLAQNRE AARKSRLRKK AYVQQLESSR 60 IKLAQLEQDL QRTRSQGFFV GGCAAAFGNI SSGAAMFDME YSRWLEDDHR HLSELRTRLH 120 AHLSDTDLQT IVDGYISHYD KIFRLKEAAA KSDVLHLITG MWMTPVERCF VWIGDFRPSE 180 LIKMLVSQLD PLTEHQVMGI CNLQHSSQQA EEALTLGLEQ LYHSLMDSIA SGPVIHEMQQ 240 MAVALSKLAN LEGFLHQADN LRQQILHQLP RILTVRQTAR CFLVIGGYNQ RLRALSSLWA 300 SHGPPEVLIS DDQSCQTTDL QMVMVQQSQN HFSNF*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269\|PubMed:20805327}.
Uniprot	TISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269\|PubMed:20805327}.

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012442457.1	0.0	PREDICTED: transcription factor HBP-1b(c38)-like isoform X4
Swissprot	Q93XM6	1e-164	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A0D2TLX9	0.0	A0A0D2TLX9_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2UIJ0	0.0	A0A0D2UIJ0_GOSRA; Uncharacterized protein
STRING	Gorai.009G086200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-162	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G086200.4

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]