PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.009G086200.3 | ||||||||
Common Name | B456_009G086200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 492aa MW: 54888.6 Da PI: 6.7986 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.8 | 3.6e-11 | 183 | 219 | 2 | 38 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 ++ k rr+++NReAAr+sR+RKka++++Le +L Gorai.009G086200.3 183 PDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKL 219 678999************************9754444 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 5.6E-8 | 177 | 228 | No hit | No description |
SMART | SM00338 | 7.0E-8 | 182 | 249 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.14 | 184 | 228 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.7E-8 | 184 | 226 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 2.16E-22 | 186 | 238 | No hit | No description |
SuperFamily | SSF57959 | 8.84E-7 | 186 | 229 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 189 | 204 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 5.0E-30 | 267 | 342 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 492 aa Download sequence Send to blast |
MENHRVGETG LTDSGPSSNY HHHAVLHGMN APISSNFIHQ NGSAFGFGEL EEAIVPHGVE 60 LTNDEAKAPA LFTRSRPSSA TLAMLPSNWS LRFQQTPRVE SWNSRGESTD SVSSSAVNTL 120 PSNQLQPESP ISQKESSSAD HHQPFNHKPL QQQQLEMASD ISSLNQSAAQ EKGRGSSSSE 180 KQPDAKTLRR LAQNREAARK SRLRKKAYVQ QLESSRIKLA QLEQDLQRTR SQGFFVGGCA 240 AAFGNISSGA AMFDMEYSRW LEDDHRHLSE LRTRLHAHLS DTDLQTIVDG YISHYDKIFR 300 LKEAAAKSDV LHLITGMWMT PVERCFVWIG DFRPSELIKM LVSQLDPLTE HQVMGICNLQ 360 HSSQQAEEAL TLGLEQLYHS LMDSIASGPV IHEMQQMAVA LSKLANLEGF LHQADNLRQQ 420 ILHQLPRILT VRQTARCFLV IGGYNQRLRA LSSLWASHGP PEVLISDDQS CQTTDLQMVM 480 VQQSQNHFSN F* |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269|PubMed:20805327}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269|PubMed:20805327}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX581673 | 3e-38 | JX581673.1 Gossypium hirsutum clone NBRI_GE14350 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012442457.1 | 0.0 | PREDICTED: transcription factor HBP-1b(c38)-like isoform X4 | ||||
Swissprot | Q93XM6 | 0.0 | TGA9_ARATH; Transcription factor TGA9 | ||||
TrEMBL | A0A0D2UIJ0 | 0.0 | A0A0D2UIJ0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G086200.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08320.3 | 1e-177 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.009G086200.3 |
Publications ? help Back to Top | |||
---|---|---|---|
|