PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G086200.1
Common NameB456_009G086200, LOC105767455
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 510aa    MW: 57012.8 Da    PI: 6.7497
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G086200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.73.8e-11201237238
                         XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 
                         ++ k  rr+++NReAAr+sR+RKka++++Le    +L
  Gorai.009G086200.1 201 PDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKL 237
                         678999************************9754444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.1E-7195246No hitNo description
SMARTSM003387.0E-8200267IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.14202246IPR004827Basic-leucine zipper domain
PfamPF001703.8E-8202244IPR004827Basic-leucine zipper domain
CDDcd147086.84E-22204256No hitNo description
SuperFamilySSF579598.44E-7204247No hitNo description
PROSITE patternPS000360207222IPR004827Basic-leucine zipper domain
PfamPF141445.3E-30285360IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MENHRVGETG LTDSGPSSNY HHHAVLHGMN APISSNFIHQ NGSAFGFGEL EEAIVPHGVE  60
LTNDEAKAPA LFTRSRPSSA TLAMLPSNWS LRFQQTPRES WNSRGESTDS VSSSAVNTLP  120
SNQLQPESPI SQKESSSADH HQPFNHKPLQ QQQLEMASDI SSLNQSAAQE KLQEQESHNN  180
QQSATLPRNF GRGSSSSEKQ PDAKTLRRLA QNREAARKSR LRKKAYVQQL ESSRIKLAQL  240
EQDLQRTRSQ GFFVGGCAAA FGNISSGAAM FDMEYSRWLE DDHRHLSELR TRLHAHLSDT  300
DLQTIVDGYI SHYDKIFRLK EAAAKSDVLH LITGMWMTPV ERCFVWIGDF RPSELIKMLV  360
SQLDPLTEHQ VMGICNLQHS SQQAEEALTL GLEQLYHSLM DSIASGPVIH EMQQMAVALS  420
KLANLEGFLH QADNLRQQIL HQLPRILTVR QTARCFLVIG GYNQRLRALS SLWASHGPPE  480
VLISDDQSCQ TTDLQMVMVQ QSQNHFSNF*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269|PubMed:20805327}.
UniprotTISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269|PubMed:20805327}.
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5816732e-36JX581673.1 Gossypium hirsutum clone NBRI_GE14350 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442454.10.0PREDICTED: transcription factor HBP-1b(c38)-like isoform X1
SwissprotQ93XM60.0TGA9_ARATH; Transcription factor TGA9
TrEMBLA0A0D2RWP10.0A0A0D2RWP1_GOSRA; Uncharacterized protein
STRINGGorai.009G086200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55242441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-175bZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  3. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]