PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G085700.1

Common Name

B456_009G085700, LOC105767988

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 225aa MW: 25254.6 Da PI: 5.2504

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G085700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.2	1.1e-10	136	185	1	51
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 e+e k+ + k+kNR++A +sR++ k+ + Leekv++L +eN Lkk l + Gorai.009G085700.1 136 EAEQKKRKNKIKNRISAEKSRAKSKEHTRFLEEKVEQLRNENAHLKKLL-S 185 67899*****************************************543.3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.2E-11	133	185	No hit	No description
SMART	SM00338	1.2E-4	136	197	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.3E-8	136	185	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.841	138	182	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.5E-8	140	187	No hit	No description
PROSITE pattern	PS00036	0	143	158	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MGDNTLDWAS LLAGLPDSDE LMSLLVNDVI VEKPEDEQPQ EGSKFLVQPT TVIPQQQDIH 60 NVATDVETGS SSCRLNDQNK IIRNGGCLIN PLGFPYRCRM QVLAADAPSG SGELLVMNDL 120 PVYKRGRNNI QEAIEEAEQK KRKNKIKNRI SAEKSRAKSK EHTRFLEEKV EQLRNENAHL 180 KKLLSLEAAS TERLPEERGD LWEKAKRCLE LKELQTYIGA IYGD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012443100.1	1e-165	PREDICTED: uncharacterized protein LOC105767988 isoform X1
Refseq	XP_012443101.1	1e-165	PREDICTED: uncharacterized protein LOC105767988 isoform X1
TrEMBL	A0A0D2TLX2	1e-164	A0A0D2TLX2_GOSRA; Uncharacterized protein
STRING	Gorai.009G085700.1	1e-165	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24557	2	3

Link Out ? help Back to Top
Phytozome	Gorai.009G085700.1
Entrez Gene	105767988

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]