PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G085200.1 | ||||||||
Common Name | B456_009G085200, LOC105770909 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NF-YB | ||||||||
Protein Properties | Length: 168aa MW: 19207.3 Da PI: 5.0057 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 47.3 | 4.9e-15 | 8 | 103 | 5 | 95 |
NF-YB 5 drflPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 ++lP a v r++k+ l + + + kda e + fi ++++ a+d c++ kr+t+n++d++ al ++ f ++v+pl++ l+++ Gorai.009G085200.1 8 AEELPKAIVRRVVKEKLSEcspdyDFNVHKDAHLAFTESARIFIHYLSATANDICKESKRQTMNAEDVFKALEEIEFSEFVKPLRASLAEF 98 5689**********9997622222458**************************************************************** PP NF-YB 91 releg 95 r+ ++ Gorai.009G085200.1 99 RKKNA 103 *8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 8.7E-31 | 5 | 162 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.9E-10 | 10 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.52E-22 | 11 | 109 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MEKVVSEAEE LPKAIVRRVV KEKLSECSPD YDFNVHKDAH LAFTESARIF IHYLSATAND 60 ICKESKRQTM NAEDVFKALE EIEFSEFVKP LRASLAEFRK KNAGKKGGAA KENEVKKKRK 120 IEYSSAKNGT KTKQKKEDNH KEEEQVEGEQ EQDEEEDNEE EENHGSE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 98 | 119 | RKKNAGKKGGAAKENEVKKKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012447729.1 | 1e-116 | PREDICTED: DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A0D2TG48 | 1e-115 | A0A0D2TG48_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G085200.1 | 1e-116 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12007 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 2e-47 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G085200.1 |
Entrez Gene | 105770909 |
Publications ? help Back to Top | |||
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