PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G080900.1

Common Name

B456_009G080900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 130aa MW: 15288.7 Da PI: 4.841

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G080900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.2	1.6e-07	13	59	2	46
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 + W+t E +l+ +a+ ++ + +W +Ia ++ g+++k++ +++ + Gorai.009G080900.1 13 NEWSTLENKLFEHAFLVFPEEtsyRWQKIADRIS-GKSAKEVEEHFDM 59 68***************99*********.********966 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	1.2E-4	11	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.7E-6	13	60	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.95E-10	13	68	IPR009057	Homeodomain-like
CDD	cd00167	7.63E-4	14	61	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MNPQNQNNNN LTNEWSTLEN KLFEHAFLVF PEETSYRWQK IADRISGKSA KEVEEHFDML 60 LHDVYEIEAG RIEIPRYADD SSMLLSNWNS NNQIYFTSKS KHQLDNERKE GSPWTEEEHN 120 KYTAHLNSP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012442385.1	3e-84	PREDICTED: protein RADIALIS-like 4 isoform X1
TrEMBL	A0A0D2QBQ6	1e-90	A0A0D2QBQ6_GOSRA; Uncharacterized protein
STRING	Gorai.009G080900.1	2e-91	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24508	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	5e-25	MYB family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G080900.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]