PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G079400.2 | ||||||||
Common Name | B456_009G079400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 250aa MW: 27544.6 Da PI: 8.6462 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 128.4 | 2.1e-40 | 21 | 82 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss Gorai.009G079400.2 21 HEQALKCPRCDSINTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 82 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-28 | 9 | 77 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.4E-34 | 23 | 79 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.469 | 25 | 79 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 27 | 63 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MDGSFYQTTP GQQARKPRPQ HEQALKCPRC DSINTKFCYY NNYSLSQPRY FCKSCRRYWT 60 KGGTLRNVPV GGGCRKNKRS SSSSSSSSSS KRSQDQPLLT STTNPLIAGH LPPLNYDTND 120 LSLAFARLQK QSGFPLGFDD FGNPSLNGCT SSTSPPNPAI VDALRSSFLG NQNSLQNFYY 180 GFGNENMGEV EDMGFNGELM VPYHNEEMSN ASTVTTMKKE LSIADFDSGR GTWNGFNSSW 240 HGLLNSPLM* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF351547 | 0.0 | AF351547.1 Gossypium hirsutum clone JESPR310 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012445564.1 | 1e-179 | PREDICTED: dof zinc finger protein DOF3.1-like | ||||
TrEMBL | A0A0D2UIC7 | 0.0 | A0A0D2UIC7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G079400.1 | 1e-178 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28510.1 | 7e-39 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G079400.2 |
Publications ? help Back to Top | |||
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