PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G079400.2
Common NameB456_009G079400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 250aa    MW: 27544.6 Da    PI: 8.6462
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G079400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof128.42.1e-402182263
              zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                        +e+alkcprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss
  Gorai.009G079400.2 21 HEQALKCPRCDSINTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 82
                        7899******************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-28977IPR003851Zinc finger, Dof-type
PfamPF027012.4E-342379IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4692579IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102763IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDGSFYQTTP GQQARKPRPQ HEQALKCPRC DSINTKFCYY NNYSLSQPRY FCKSCRRYWT  60
KGGTLRNVPV GGGCRKNKRS SSSSSSSSSS KRSQDQPLLT STTNPLIAGH LPPLNYDTND  120
LSLAFARLQK QSGFPLGFDD FGNPSLNGCT SSTSPPNPAI VDALRSSFLG NQNSLQNFYY  180
GFGNENMGEV EDMGFNGELM VPYHNEEMSN ASTVTTMKKE LSIADFDSGR GTWNGFNSSW  240
HGLLNSPLM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3515470.0AF351547.1 Gossypium hirsutum clone JESPR310 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445564.11e-179PREDICTED: dof zinc finger protein DOF3.1-like
TrEMBLA0A0D2UIC70.0A0A0D2UIC7_GOSRA; Uncharacterized protein
STRINGGorai.009G079400.11e-178(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.17e-39Dof family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]