PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G075300.3 | ||||||||
Common Name | B456_009G075300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | SRS | ||||||||
Protein Properties | Length: 247aa MW: 26136.2 Da PI: 9.7304 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 121.1 | 1.4e-37 | 131 | 237 | 4 | 109 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklss 93 +a+CqdCGnqakkdC+++RCRtCCksr+fdC thvkstWvpaa+rr+rq ++ a++ a + ++a +k++r +s +++++s+t++s+ Gorai.009G075300.3 131 SGATCQDCGNQAKKDCSYRRCRTCCKSRSFDCPTHVKSTWVPAARRRDRQLMTVGATAAGAGLSgSTAGPKKPRLRTS-QTTTASHTSTSN 220 5679*********************************************99888777766655547888888988755.555555555555 PP DUF702 94 .aeskkeletsslPeev 109 ++++++l+t s P+ + Gorai.009G075300.3 221 aTTPPRSLDTCSSPQSL 237 15667889998888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.1E-32 | 132 | 223 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 4.0E-27 | 134 | 176 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MGMVGLRDFV LVTPASFNHH HRHHHTQDSI MANDQINGPN DPTALGVGVI PLLTAAPCLA 60 PHHAEDTDLL NNNDRSKFTG MRLWQKPNSS HYLIKSSSNP NNHNSSSMNL IQSSGGIGGT 120 GSGSGGSGLS SGATCQDCGN QAKKDCSYRR CRTCCKSRSF DCPTHVKSTW VPAARRRDRQ 180 LMTVGATAAG AGLSGSTAGP KKPRLRTSQT TTASHTSTSN ATTPPRSLDT CSSPQSLYLF 240 LFRCGV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012441791.1 | 1e-159 | PREDICTED: uncharacterized protein LOC105766761 | ||||
Refseq | XP_016689288.1 | 1e-171 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like | ||||
TrEMBL | A0A0D2QB74 | 0.0 | A0A0D2QB74_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G075300.1 | 1e-172 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.3 | 9e-36 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G075300.3 |
Publications ? help Back to Top | |||
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