PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G075300.1 | ||||||||
Common Name | B456_009G075300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | SRS | ||||||||
Protein Properties | Length: 340aa MW: 35969 Da PI: 8.6277 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 205.2 | 1.8e-63 | 131 | 291 | 4 | 153 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklss 93 +a+CqdCGnqakkdC+++RCRtCCksr+fdC thvkstWvpaa+rr+rq ++ a++ a + ++a +k++r +s +++++s+t++s+ Gorai.009G075300.1 131 SGATCQDCGNQAKKDCSYRRCRTCCKSRSFDCPTHVKSTWVPAARRRDRQLMTVGATAAGAGLSgSTAGPKKPRLRTS-QTTTASHTSTSN 220 5679*********************************************99888777766655547888888888755.555555555555 PP DUF702 94 .aeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++++++l+t s lP++v+++avf+cvrv+++++ge+e+aY+++v+igGhvfkG+LydqG++ Gorai.009G075300.1 221 aTTPPRSLDTCSspqnaefkepLPAQVRATAVFKCVRVTTIEEGEDEFAYEAVVKIGGHVFKGLLYDQGVD 291 155678888888899******************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 8.6E-60 | 132 | 291 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 6.4E-27 | 134 | 176 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.6E-25 | 243 | 290 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MGMVGLRDFV LVTPASFNHH HRHHHTQDSI MANDQINGPN DPTALGVGVI PLLTAAPCLA 60 PHHAEDTDLL NNNDRSKFTG MRLWQKPNSS HYLIKSSSNP NNHNSSSMNL IQSSGGIGGT 120 GSGSGGSGLS SGATCQDCGN QAKKDCSYRR CRTCCKSRSF DCPTHVKSTW VPAARRRDRQ 180 LMTVGATAAG AGLSGSTAGP KKPRLRTSQT TTASHTSTSN ATTPPRSLDT CSSPQNAEFK 240 EPLPAQVRAT AVFKCVRVTT IEEGEDEFAY EAVVKIGGHV FKGLLYDQGV DGFPNISQLH 300 LSGRNGESSS SPVLDPSQVY EATTGGGLLR GSNYGCTRN* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}. | |||||
Uniprot | TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012441791.1 | 0.0 | PREDICTED: uncharacterized protein LOC105766761 | ||||
Refseq | XP_016689288.1 | 0.0 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like | ||||
Swissprot | Q94CK9 | 9e-80 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A0D2UI15 | 0.0 | A0A0D2UI15_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G075300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5883 | 26 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 4e-73 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G075300.1 |
Publications ? help Back to Top | |||
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